Gene : Phvul.001G203400 P. vulgaris v2.1
Defline:  (1 of 1) PTHR12419:SF10 - PROTEIN OTUB-3, ISOFORM B Genomic Order:  2016
Name:  ? Phvul.001G203400 Secondary Identifier:  ? PAC:37169732
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G203400 0.5kb upstream 0.5kb upstream 6811 true Chr01: 46192887-46199697 Phaseolus vulgaris
Phvul.001G203400 0.5kb upstream 0.5kb upstream 500 false Chr01: 46192887-46193386 Phaseolus vulgaris
Phvul.001G203400 0.5kb downstream 0.5kb downstream 6811 true Chr01: 46193387-46200197 Phaseolus vulgaris
Phvul.001G203400 0.5kb downstream 0.5kb downstream 500 false Chr01: 46199698-46200197 Phaseolus vulgaris
Phvul.001G203400 1.0kb upstream 1.0kb upstream 7311 true Chr01: 46192387-46199697 Phaseolus vulgaris
Phvul.001G203400 1.0kb upstream 1.0kb upstream 1000 false Chr01: 46192387-46193386 Phaseolus vulgaris
Phvul.001G203400 1.0kb downstream 1.0kb downstream 7311 true Chr01: 46193387-46200697 Phaseolus vulgaris
Phvul.001G203400 1.0kb downstream 1.0kb downstream 1000 false Chr01: 46199698-46200697 Phaseolus vulgaris
Phvul.001G203400 2.0kb upstream 2.0kb upstream 8311 true Chr01: 46191387-46199697 Phaseolus vulgaris
Phvul.001G203400 2.0kb upstream 2.0kb upstream 2000 false Chr01: 46191387-46193386 Phaseolus vulgaris
Phvul.001G203400 2.0kb downstream 2.0kb downstream 8311 true Chr01: 46193387-46201697 Phaseolus vulgaris
Phvul.001G203400 2.0kb downstream 2.0kb downstream 2000 false Chr01: 46199698-46201697 Phaseolus vulgaris
Phvul.001G203400 5.0kb upstream 5.0kb upstream 11311 true Chr01: 46188387-46199697 Phaseolus vulgaris
Phvul.001G203400 5.0kb upstream 5.0kb upstream 5000 false Chr01: 46188387-46193386 Phaseolus vulgaris
Phvul.001G203400 5.0kb downstream 5.0kb downstream 11311 true Chr01: 46193387-46204697 Phaseolus vulgaris
Phvul.001G203400 5.0kb downstream 5.0kb downstream 5000 false Chr01: 46199698-46204697 Phaseolus vulgaris
Phvul.001G203400 10.0kb upstream 10.0kb upstream 16311 true Chr01: 46183387-46199697 Phaseolus vulgaris
Phvul.001G203400 10.0kb upstream 10.0kb upstream 10000 false Chr01: 46183387-46193386 Phaseolus vulgaris
Phvul.001G203400 10.0kb downstream 10.0kb downstream 16311 true Chr01: 46193387-46209697 Phaseolus vulgaris
Phvul.001G203400 10.0kb downstream 10.0kb downstream 10000 false Chr01: 46199698-46209697 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307529 5265 Fabidae View MSA
124062666 5270 Rosid View MSA
123738342 5271 Pentapetalae View MSA
122787520 5272 Eudicot View MSA
122043014 5273 Angiosperm View MSA
121346407 5274 Embryophyte View MSA
123428461 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 33.9304 0.0 104.197 High High
cufflinks 31.7465 0.0 97.7336    
cufflinks 26.1308 0.0 80.5875    
cufflinks 32.3637 0.0 100.251   High
cufflinks 24.8529 0.0 78.3092    
cufflinks 21.4798 0.0 67.3567   Low
cufflinks 22.4978 0.0 70.6087   Low
cufflinks 21.2222 0.0 67.3387   Low
cufflinks 29.3453 0.0 90.9928    
cufflinks 26.3559 0.0 81.3394    
cufflinks 30.9027 0.0 96.6019    

0 Strain