Gene : Phvul.001G206000 P. vulgaris v2.1
Defline:  (1 of 3) K08238 - xyloglucan 6-xylosyltransferase [EC:2.4.2.39] Xyl a1-6 Glc (XXT) Genomic Order:  2043
Name:  ? Phvul.001G206000 Secondary Identifier:  ? PAC:37169174
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5936 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G206000 0.5kb upstream 0.5kb upstream 3235 true Chr01: 46360342-46363576 Phaseolus vulgaris
Phvul.001G206000 0.5kb upstream 0.5kb upstream 500 false Chr01: 46363077-46363576 Phaseolus vulgaris
Phvul.001G206000 0.5kb downstream 0.5kb downstream 3235 true Chr01: 46359842-46363076 Phaseolus vulgaris
Phvul.001G206000 0.5kb downstream 0.5kb downstream 500 false Chr01: 46359842-46360341 Phaseolus vulgaris
Phvul.001G206000 1.0kb upstream 1.0kb upstream 3735 true Chr01: 46360342-46364076 Phaseolus vulgaris
Phvul.001G206000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 46363077-46364076 Phaseolus vulgaris
Phvul.001G206000 1.0kb downstream 1.0kb downstream 3735 true Chr01: 46359342-46363076 Phaseolus vulgaris
Phvul.001G206000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 46359342-46360341 Phaseolus vulgaris
Phvul.001G206000 2.0kb upstream 2.0kb upstream 4735 true Chr01: 46360342-46365076 Phaseolus vulgaris
Phvul.001G206000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 46363077-46365076 Phaseolus vulgaris
Phvul.001G206000 2.0kb downstream 2.0kb downstream 4735 true Chr01: 46358342-46363076 Phaseolus vulgaris
Phvul.001G206000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 46358342-46360341 Phaseolus vulgaris
Phvul.001G206000 5.0kb upstream 5.0kb upstream 7735 true Chr01: 46360342-46368076 Phaseolus vulgaris
Phvul.001G206000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 46363077-46368076 Phaseolus vulgaris
Phvul.001G206000 5.0kb downstream 5.0kb downstream 7735 true Chr01: 46355342-46363076 Phaseolus vulgaris
Phvul.001G206000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 46355342-46360341 Phaseolus vulgaris
Phvul.001G206000 10.0kb upstream 10.0kb upstream 12735 true Chr01: 46360342-46373076 Phaseolus vulgaris
Phvul.001G206000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 46363077-46373076 Phaseolus vulgaris
Phvul.001G206000 10.0kb downstream 10.0kb downstream 12735 true Chr01: 46350342-46363076 Phaseolus vulgaris
Phvul.001G206000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 46350342-46360341 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311816 5265 Fabidae View MSA
124064369 5270 Rosid View MSA
123736946 5271 Pentapetalae View MSA
122789380 5272 Eudicot View MSA
122042255 5273 Angiosperm View MSA
121349054 5274 Embryophyte View MSA
123428220 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.61374 0.0 13.2844    
cufflinks 1.5972 0.0 7.25668    
cufflinks 0.896967 0.0 3.64179    
cufflinks 5.33554 0.0 21.1159   High
cufflinks 1.22595 0.0 6.02374    
cufflinks 1.01492 0.0 4.04267    
cufflinks 2.10007 0.0 8.90253    
cufflinks 3.07638 0.0 11.9965    
cufflinks 0.150006 0.0 0.607097 Low Low
cufflinks 1.19884 0.0 5.96642    
cufflinks 1.25091 0.0 6.10987    

0 Strain