Gene : Phvul.001G192800 P. vulgaris v2.1
Defline:  (1 of 252) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Genomic Order:  1907
Name:  ? Phvul.001G192800 Secondary Identifier:  ? PAC:37169465
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G192800 0.5kb upstream 0.5kb upstream 2232 true Chr01: 45158136-45160367 Phaseolus vulgaris
Phvul.001G192800 0.5kb upstream 0.5kb upstream 500 false Chr01: 45158136-45158635 Phaseolus vulgaris
Phvul.001G192800 0.5kb downstream 0.5kb downstream 2232 true Chr01: 45158636-45160867 Phaseolus vulgaris
Phvul.001G192800 0.5kb downstream 0.5kb downstream 500 false Chr01: 45160368-45160867 Phaseolus vulgaris
Phvul.001G192800 1.0kb upstream 1.0kb upstream 2732 true Chr01: 45157636-45160367 Phaseolus vulgaris
Phvul.001G192800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 45157636-45158635 Phaseolus vulgaris
Phvul.001G192800 1.0kb downstream 1.0kb downstream 2732 true Chr01: 45158636-45161367 Phaseolus vulgaris
Phvul.001G192800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 45160368-45161367 Phaseolus vulgaris
Phvul.001G192800 2.0kb upstream 2.0kb upstream 3732 true Chr01: 45156636-45160367 Phaseolus vulgaris
Phvul.001G192800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 45156636-45158635 Phaseolus vulgaris
Phvul.001G192800 2.0kb downstream 2.0kb downstream 3732 true Chr01: 45158636-45162367 Phaseolus vulgaris
Phvul.001G192800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 45160368-45162367 Phaseolus vulgaris
Phvul.001G192800 5.0kb upstream 5.0kb upstream 6732 true Chr01: 45153636-45160367 Phaseolus vulgaris
Phvul.001G192800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 45153636-45158635 Phaseolus vulgaris
Phvul.001G192800 5.0kb downstream 5.0kb downstream 6732 true Chr01: 45158636-45165367 Phaseolus vulgaris
Phvul.001G192800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 45160368-45165367 Phaseolus vulgaris
Phvul.001G192800 10.0kb upstream 10.0kb upstream 11732 true Chr01: 45148636-45160367 Phaseolus vulgaris
Phvul.001G192800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 45148636-45158635 Phaseolus vulgaris
Phvul.001G192800 10.0kb downstream 10.0kb downstream 11732 true Chr01: 45158636-45170367 Phaseolus vulgaris
Phvul.001G192800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 45160368-45170367 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307876 5265 Fabidae View MSA
124069312 5270 Rosid View MSA
123753292 5271 Pentapetalae View MSA
122796166 5272 Eudicot View MSA
122047965 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121310823 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.72678 0.0 25.6034   High
cufflinks 6.73903 0.0 20.4353    
cufflinks 1.62721 0.0 5.77028   Low
cufflinks 9.43435 0.0 27.514   High
cufflinks 3.86364 0.0 12.5086    
cufflinks 2.45636 0.0 8.35117   Low
cufflinks 3.58426 0.0 11.6618    
cufflinks 5.38332 0.0 16.7058    
cufflinks 4.02972 0.0 12.9617    
cufflinks 8.15627 0.0 24.1966    
cufflinks 6.34535 0.0 19.4275    

0 Strain