Gene : Phvul.002G031500 P. vulgaris v2.1
Defline:  (1 of 2) PTHR16517:SF40 - TUBBY-LIKE F-BOX PROTEIN 11-RELATED Genomic Order:  313
Name:  ? Phvul.002G031500 Secondary Identifier:  ? PAC:37175355
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G031500 0.5kb upstream 0.5kb upstream 3597 true Chr02: 3196105-3199701 Phaseolus vulgaris
Phvul.002G031500 0.5kb upstream 0.5kb upstream 500 false Chr02: 3199202-3199701 Phaseolus vulgaris
Phvul.002G031500 0.5kb downstream 0.5kb downstream 3597 true Chr02: 3195605-3199201 Phaseolus vulgaris
Phvul.002G031500 0.5kb downstream 0.5kb downstream 500 false Chr02: 3195605-3196104 Phaseolus vulgaris
Phvul.002G031500 1.0kb upstream 1.0kb upstream 4097 true Chr02: 3196105-3200201 Phaseolus vulgaris
Phvul.002G031500 1.0kb upstream 1.0kb upstream 1000 false Chr02: 3199202-3200201 Phaseolus vulgaris
Phvul.002G031500 1.0kb downstream 1.0kb downstream 4097 true Chr02: 3195105-3199201 Phaseolus vulgaris
Phvul.002G031500 1.0kb downstream 1.0kb downstream 1000 false Chr02: 3195105-3196104 Phaseolus vulgaris
Phvul.002G031500 2.0kb upstream 2.0kb upstream 5097 true Chr02: 3196105-3201201 Phaseolus vulgaris
Phvul.002G031500 2.0kb upstream 2.0kb upstream 2000 false Chr02: 3199202-3201201 Phaseolus vulgaris
Phvul.002G031500 2.0kb downstream 2.0kb downstream 5097 true Chr02: 3194105-3199201 Phaseolus vulgaris
Phvul.002G031500 2.0kb downstream 2.0kb downstream 2000 false Chr02: 3194105-3196104 Phaseolus vulgaris
Phvul.002G031500 5.0kb upstream 5.0kb upstream 8097 true Chr02: 3196105-3204201 Phaseolus vulgaris
Phvul.002G031500 5.0kb upstream 5.0kb upstream 5000 false Chr02: 3199202-3204201 Phaseolus vulgaris
Phvul.002G031500 5.0kb downstream 5.0kb downstream 8097 true Chr02: 3191105-3199201 Phaseolus vulgaris
Phvul.002G031500 5.0kb downstream 5.0kb downstream 5000 false Chr02: 3191105-3196104 Phaseolus vulgaris
Phvul.002G031500 10.0kb upstream 10.0kb upstream 13097 true Chr02: 3196105-3209201 Phaseolus vulgaris
Phvul.002G031500 10.0kb upstream 10.0kb upstream 10000 false Chr02: 3199202-3209201 Phaseolus vulgaris
Phvul.002G031500 10.0kb downstream 10.0kb downstream 13097 true Chr02: 3186105-3199201 Phaseolus vulgaris
Phvul.002G031500 10.0kb downstream 10.0kb downstream 10000 false Chr02: 3186105-3196104 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311486 5265 Fabidae View MSA
124064248 5270 Rosid View MSA
123747341 5271 Pentapetalae View MSA
122790799 5272 Eudicot View MSA
122049170 5273 Angiosperm View MSA
123429062 5275 Viridiplantae View MSA
121348967 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.1715 0.0 70.2899    
cufflinks 42.3057 0.0 111.18 High High
cufflinks 32.2767 0.0 83.8506    
cufflinks 26.5498 0.0 68.6503    
cufflinks 24.9724 0.0 64.5496    
cufflinks 37.8677 0.0 98.9626 High High
cufflinks 18.8787 0.0 48.8773   Low
cufflinks 28.8534 0.0 74.8003 High  
cufflinks 20.365 0.0 52.6796   Low
cufflinks 29.9215 0.0 77.5416    
cufflinks 35.5596 0.0 92.5613 High  

0 Strain