Gene : Phvul.002G031200 P. vulgaris v2.1
Defline:  (1 of 1) PTHR23075:SF3 - AAA-TYPE ATPASE FAMILY PROTEIN-RELATED Genomic Order:  310
Name:  ? Phvul.002G031200 Secondary Identifier:  ? PAC:37176074
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G031200 0.5kb upstream 0.5kb upstream 6030 true Chr02: 3166676-3172705 Phaseolus vulgaris
Phvul.002G031200 0.5kb upstream 0.5kb upstream 500 false Chr02: 3172206-3172705 Phaseolus vulgaris
Phvul.002G031200 0.5kb downstream 0.5kb downstream 6030 true Chr02: 3166176-3172205 Phaseolus vulgaris
Phvul.002G031200 0.5kb downstream 0.5kb downstream 500 false Chr02: 3166176-3166675 Phaseolus vulgaris
Phvul.002G031200 1.0kb upstream 1.0kb upstream 6530 true Chr02: 3166676-3173205 Phaseolus vulgaris
Phvul.002G031200 1.0kb upstream 1.0kb upstream 1000 false Chr02: 3172206-3173205 Phaseolus vulgaris
Phvul.002G031200 1.0kb downstream 1.0kb downstream 6530 true Chr02: 3165676-3172205 Phaseolus vulgaris
Phvul.002G031200 1.0kb downstream 1.0kb downstream 1000 false Chr02: 3165676-3166675 Phaseolus vulgaris
Phvul.002G031200 2.0kb upstream 2.0kb upstream 7530 true Chr02: 3166676-3174205 Phaseolus vulgaris
Phvul.002G031200 2.0kb upstream 2.0kb upstream 2000 false Chr02: 3172206-3174205 Phaseolus vulgaris
Phvul.002G031200 2.0kb downstream 2.0kb downstream 7530 true Chr02: 3164676-3172205 Phaseolus vulgaris
Phvul.002G031200 2.0kb downstream 2.0kb downstream 2000 false Chr02: 3164676-3166675 Phaseolus vulgaris
Phvul.002G031200 5.0kb upstream 5.0kb upstream 10530 true Chr02: 3166676-3177205 Phaseolus vulgaris
Phvul.002G031200 5.0kb upstream 5.0kb upstream 5000 false Chr02: 3172206-3177205 Phaseolus vulgaris
Phvul.002G031200 5.0kb downstream 5.0kb downstream 10530 true Chr02: 3161676-3172205 Phaseolus vulgaris
Phvul.002G031200 5.0kb downstream 5.0kb downstream 5000 false Chr02: 3161676-3166675 Phaseolus vulgaris
Phvul.002G031200 10.0kb upstream 10.0kb upstream 15530 true Chr02: 3166676-3182205 Phaseolus vulgaris
Phvul.002G031200 10.0kb upstream 10.0kb upstream 10000 false Chr02: 3172206-3182205 Phaseolus vulgaris
Phvul.002G031200 10.0kb downstream 10.0kb downstream 15530 true Chr02: 3156676-3172205 Phaseolus vulgaris
Phvul.002G031200 10.0kb downstream 10.0kb downstream 10000 false Chr02: 3156676-3166675 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308293 5265 Fabidae View MSA
124067712 5270 Rosid View MSA
123739044 5271 Pentapetalae View MSA
122789244 5272 Eudicot View MSA
122051121 5273 Angiosperm View MSA
121347220 5274 Embryophyte View MSA
123424543 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.91306 0.0 13.5482   Low
cufflinks 11.6356 0.0 30.251   High
cufflinks 5.74895 0.0 15.6595    
cufflinks 4.58319 0.0 12.7677   Low
cufflinks 8.67469 0.0 22.9833    
cufflinks 4.55588 0.0 12.6381   Low
cufflinks 11.6791 0.0 30.3141   High
cufflinks 13.3958 0.0 34.6649   High
cufflinks 10.8593 0.0 28.2607    
cufflinks 8.50328 0.0 22.4681    
cufflinks 7.27744 0.0 19.4639    

0 Strain