Gene : Phvul.002G027700 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11946:SF53 - TYROSINE-TRNA LIGASE Genomic Order:  275
Name:  ? Phvul.002G027700 Secondary Identifier:  ? PAC:37176851
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris TRNA-CHARGING-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G027700 0.5kb upstream 0.5kb upstream 4029 true Chr02: 2884819-2888847 Phaseolus vulgaris
Phvul.002G027700 0.5kb upstream 0.5kb upstream 500 false Chr02: 2888348-2888847 Phaseolus vulgaris
Phvul.002G027700 0.5kb downstream 0.5kb downstream 4029 true Chr02: 2884319-2888347 Phaseolus vulgaris
Phvul.002G027700 0.5kb downstream 0.5kb downstream 500 false Chr02: 2884319-2884818 Phaseolus vulgaris
Phvul.002G027700 1.0kb upstream 1.0kb upstream 4529 true Chr02: 2884819-2889347 Phaseolus vulgaris
Phvul.002G027700 1.0kb upstream 1.0kb upstream 1000 false Chr02: 2888348-2889347 Phaseolus vulgaris
Phvul.002G027700 1.0kb downstream 1.0kb downstream 4529 true Chr02: 2883819-2888347 Phaseolus vulgaris
Phvul.002G027700 1.0kb downstream 1.0kb downstream 1000 false Chr02: 2883819-2884818 Phaseolus vulgaris
Phvul.002G027700 2.0kb upstream 2.0kb upstream 5529 true Chr02: 2884819-2890347 Phaseolus vulgaris
Phvul.002G027700 2.0kb upstream 2.0kb upstream 2000 false Chr02: 2888348-2890347 Phaseolus vulgaris
Phvul.002G027700 2.0kb downstream 2.0kb downstream 5529 true Chr02: 2882819-2888347 Phaseolus vulgaris
Phvul.002G027700 2.0kb downstream 2.0kb downstream 2000 false Chr02: 2882819-2884818 Phaseolus vulgaris
Phvul.002G027700 5.0kb upstream 5.0kb upstream 8529 true Chr02: 2884819-2893347 Phaseolus vulgaris
Phvul.002G027700 5.0kb upstream 5.0kb upstream 5000 false Chr02: 2888348-2893347 Phaseolus vulgaris
Phvul.002G027700 5.0kb downstream 5.0kb downstream 8529 true Chr02: 2879819-2888347 Phaseolus vulgaris
Phvul.002G027700 5.0kb downstream 5.0kb downstream 5000 false Chr02: 2879819-2884818 Phaseolus vulgaris
Phvul.002G027700 10.0kb upstream 10.0kb upstream 13529 true Chr02: 2884819-2898347 Phaseolus vulgaris
Phvul.002G027700 10.0kb upstream 10.0kb upstream 10000 false Chr02: 2888348-2898347 Phaseolus vulgaris
Phvul.002G027700 10.0kb downstream 10.0kb downstream 13529 true Chr02: 2874819-2888347 Phaseolus vulgaris
Phvul.002G027700 10.0kb downstream 10.0kb downstream 10000 false Chr02: 2874819-2884818 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041140 5273 Angiosperm View MSA
122300675 5265 Fabidae View MSA
124067853 5270 Rosid View MSA
123747436 5271 Pentapetalae View MSA
122790144 5272 Eudicot View MSA
121344192 5274 Embryophyte View MSA
123424631 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 33.7631 0.0 87.4398 High  
cufflinks 42.1297 0.0 109.817 High  
cufflinks 25.5583 0.0 66.0666   Low
cufflinks 47.1518 0.0 123.062 High High
cufflinks 30.6746 0.0 79.2967    
cufflinks 21.4419 0.0 55.546   Low
cufflinks 36.2936 0.0 94.2214 High  
cufflinks 39.3802 0.0 102.558 High  
cufflinks 50.7054 0.0 133.463 High High
cufflinks 37.0518 0.0 96.1123 High  
cufflinks 34.2714 0.0 88.733 High  

0 Strain