Gene : Phvul.002G020600 P. vulgaris v2.1
Defline:  (1 of 3) 1.1.1.102 - 3-dehydrosphinganine reductase / KTS reductase Genomic Order:  204
Name:  ? Phvul.002G020600 Secondary Identifier:  ? PAC:37174516
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5129 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G020600 0.5kb upstream 0.5kb upstream 2099 true Chr02: 2206991-2209089 Phaseolus vulgaris
Phvul.002G020600 0.5kb upstream 0.5kb upstream 500 false Chr02: 2206991-2207490 Phaseolus vulgaris
Phvul.002G020600 0.5kb downstream 0.5kb downstream 2099 true Chr02: 2207491-2209589 Phaseolus vulgaris
Phvul.002G020600 0.5kb downstream 0.5kb downstream 500 false Chr02: 2209090-2209589 Phaseolus vulgaris
Phvul.002G020600 1.0kb upstream 1.0kb upstream 2599 true Chr02: 2206491-2209089 Phaseolus vulgaris
Phvul.002G020600 1.0kb upstream 1.0kb upstream 1000 false Chr02: 2206491-2207490 Phaseolus vulgaris
Phvul.002G020600 1.0kb downstream 1.0kb downstream 2599 true Chr02: 2207491-2210089 Phaseolus vulgaris
Phvul.002G020600 1.0kb downstream 1.0kb downstream 1000 false Chr02: 2209090-2210089 Phaseolus vulgaris
Phvul.002G020600 2.0kb upstream 2.0kb upstream 3599 true Chr02: 2205491-2209089 Phaseolus vulgaris
Phvul.002G020600 2.0kb upstream 2.0kb upstream 2000 false Chr02: 2205491-2207490 Phaseolus vulgaris
Phvul.002G020600 2.0kb downstream 2.0kb downstream 3599 true Chr02: 2207491-2211089 Phaseolus vulgaris
Phvul.002G020600 2.0kb downstream 2.0kb downstream 2000 false Chr02: 2209090-2211089 Phaseolus vulgaris
Phvul.002G020600 5.0kb upstream 5.0kb upstream 6599 true Chr02: 2202491-2209089 Phaseolus vulgaris
Phvul.002G020600 5.0kb upstream 5.0kb upstream 5000 false Chr02: 2202491-2207490 Phaseolus vulgaris
Phvul.002G020600 5.0kb downstream 5.0kb downstream 6599 true Chr02: 2207491-2214089 Phaseolus vulgaris
Phvul.002G020600 5.0kb downstream 5.0kb downstream 5000 false Chr02: 2209090-2214089 Phaseolus vulgaris
Phvul.002G020600 10.0kb upstream 10.0kb upstream 11599 true Chr02: 2197491-2209089 Phaseolus vulgaris
Phvul.002G020600 10.0kb upstream 10.0kb upstream 10000 false Chr02: 2197491-2207490 Phaseolus vulgaris
Phvul.002G020600 10.0kb downstream 10.0kb downstream 11599 true Chr02: 2207491-2219089 Phaseolus vulgaris
Phvul.002G020600 10.0kb downstream 10.0kb downstream 10000 false Chr02: 2209090-2219089 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122253802 5265 Fabidae View MSA
124050243 5270 Rosid View MSA
123736848 5271 Pentapetalae View MSA
122788663 5272 Eudicot View MSA
122042834 5273 Angiosperm View MSA
121346352 5274 Embryophyte View MSA
123423987 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.10855 0.0 12.6775    
cufflinks 1.91659 0.0 6.45357    
cufflinks 4.882 0.0 14.8229    
cufflinks 6.6986 0.0 19.5707    
cufflinks 20.6713 0.0 54.5785   High
cufflinks 4.30724 0.0 13.2365    
cufflinks 1.05321 0.0 3.75432    
cufflinks 0.142858 0.0 0.602346 Low Low
cufflinks 0.991931 0.0 3.56398    
cufflinks 4.72446 0.0 14.3826    
cufflinks 16.2286 0.0 43.5675   High

0 Strain