Gene : Phvul.001G268600 P. vulgaris v2.1
Defline:  (1 of 4) 2.5.1.32 - 15-cis-phytoene synthase / PSase Genomic Order:  2669
Name:  ? Phvul.001G268600 Secondary Identifier:  ? PAC:37168705
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris CAROTENOID-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-6475 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G268600 0.5kb upstream 0.5kb upstream 2571 true Chr01: 51323835-51326405 Phaseolus vulgaris
Phvul.001G268600 0.5kb upstream 0.5kb upstream 500 false Chr01: 51325906-51326405 Phaseolus vulgaris
Phvul.001G268600 0.5kb downstream 0.5kb downstream 2571 true Chr01: 51323335-51325905 Phaseolus vulgaris
Phvul.001G268600 0.5kb downstream 0.5kb downstream 500 false Chr01: 51323335-51323834 Phaseolus vulgaris
Phvul.001G268600 1.0kb upstream 1.0kb upstream 3071 true Chr01: 51323835-51326905 Phaseolus vulgaris
Phvul.001G268600 1.0kb upstream 1.0kb upstream 1000 false Chr01: 51325906-51326905 Phaseolus vulgaris
Phvul.001G268600 1.0kb downstream 1.0kb downstream 3071 true Chr01: 51322835-51325905 Phaseolus vulgaris
Phvul.001G268600 1.0kb downstream 1.0kb downstream 1000 false Chr01: 51322835-51323834 Phaseolus vulgaris
Phvul.001G268600 2.0kb upstream 2.0kb upstream 4071 true Chr01: 51323835-51327905 Phaseolus vulgaris
Phvul.001G268600 2.0kb upstream 2.0kb upstream 2000 false Chr01: 51325906-51327905 Phaseolus vulgaris
Phvul.001G268600 2.0kb downstream 2.0kb downstream 4071 true Chr01: 51321835-51325905 Phaseolus vulgaris
Phvul.001G268600 2.0kb downstream 2.0kb downstream 2000 false Chr01: 51321835-51323834 Phaseolus vulgaris
Phvul.001G268600 5.0kb upstream 5.0kb upstream 7071 true Chr01: 51323835-51330905 Phaseolus vulgaris
Phvul.001G268600 5.0kb upstream 5.0kb upstream 5000 false Chr01: 51325906-51330905 Phaseolus vulgaris
Phvul.001G268600 5.0kb downstream 5.0kb downstream 7071 true Chr01: 51318835-51325905 Phaseolus vulgaris
Phvul.001G268600 5.0kb downstream 5.0kb downstream 5000 false Chr01: 51318835-51323834 Phaseolus vulgaris
Phvul.001G268600 10.0kb upstream 10.0kb upstream 12071 true Chr01: 51323835-51335905 Phaseolus vulgaris
Phvul.001G268600 10.0kb upstream 10.0kb upstream 10000 false Chr01: 51325906-51335905 Phaseolus vulgaris
Phvul.001G268600 10.0kb downstream 10.0kb downstream 12071 true Chr01: 51313835-51325905 Phaseolus vulgaris
Phvul.001G268600 10.0kb downstream 10.0kb downstream 10000 false Chr01: 51313835-51323834 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791897 5273 Angiosperm View MSA
122301040 5265 Fabidae View MSA
124070779 5270 Rosid View MSA
123742301 5271 Pentapetalae View MSA
122795137 5272 Eudicot View MSA
121063168 5274 Embryophyte View MSA
123102943 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.435927 0.0 1.63815 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0780912 0.0 0.342029 Low Low
cufflinks 0.218388 0.0 0.867605 Low  
cufflinks 3.26075 0.0 9.98779   High
cufflinks 0.779459 0.0 2.78307    
cufflinks 1.96357 0.0 6.38181   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.115504 0.0 0.487074 Low  

0 Strain