Gene : Phvul.002G002400 P. vulgaris v2.1
Defline:  (1 of 1) K14845 - RAT1-interacting protein (RAI1, DOM3Z) Genomic Order:  23
Name:  ? Phvul.002G002400 Secondary Identifier:  ? PAC:37176143
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G002400 0.5kb upstream 0.5kb upstream 5145 true Chr02: 195453-200597 Phaseolus vulgaris
Phvul.002G002400 0.5kb upstream 0.5kb upstream 500 false Chr02: 195453-195952 Phaseolus vulgaris
Phvul.002G002400 0.5kb downstream 0.5kb downstream 5145 true Chr02: 195953-201097 Phaseolus vulgaris
Phvul.002G002400 0.5kb downstream 0.5kb downstream 500 false Chr02: 200598-201097 Phaseolus vulgaris
Phvul.002G002400 1.0kb upstream 1.0kb upstream 5645 true Chr02: 194953-200597 Phaseolus vulgaris
Phvul.002G002400 1.0kb upstream 1.0kb upstream 1000 false Chr02: 194953-195952 Phaseolus vulgaris
Phvul.002G002400 1.0kb downstream 1.0kb downstream 5645 true Chr02: 195953-201597 Phaseolus vulgaris
Phvul.002G002400 1.0kb downstream 1.0kb downstream 1000 false Chr02: 200598-201597 Phaseolus vulgaris
Phvul.002G002400 2.0kb upstream 2.0kb upstream 6645 true Chr02: 193953-200597 Phaseolus vulgaris
Phvul.002G002400 2.0kb upstream 2.0kb upstream 2000 false Chr02: 193953-195952 Phaseolus vulgaris
Phvul.002G002400 2.0kb downstream 2.0kb downstream 6645 true Chr02: 195953-202597 Phaseolus vulgaris
Phvul.002G002400 2.0kb downstream 2.0kb downstream 2000 false Chr02: 200598-202597 Phaseolus vulgaris
Phvul.002G002400 5.0kb upstream 5.0kb upstream 9645 true Chr02: 190953-200597 Phaseolus vulgaris
Phvul.002G002400 5.0kb upstream 5.0kb upstream 5000 false Chr02: 190953-195952 Phaseolus vulgaris
Phvul.002G002400 5.0kb downstream 5.0kb downstream 9645 true Chr02: 195953-205597 Phaseolus vulgaris
Phvul.002G002400 5.0kb downstream 5.0kb downstream 5000 false Chr02: 200598-205597 Phaseolus vulgaris
Phvul.002G002400 10.0kb upstream 10.0kb upstream 14645 true Chr02: 185953-200597 Phaseolus vulgaris
Phvul.002G002400 10.0kb upstream 10.0kb upstream 10000 false Chr02: 185953-195952 Phaseolus vulgaris
Phvul.002G002400 10.0kb downstream 10.0kb downstream 14645 true Chr02: 195953-210597 Phaseolus vulgaris
Phvul.002G002400 10.0kb downstream 10.0kb downstream 10000 false Chr02: 200598-210597 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306267 5265 Fabidae View MSA
124073071 5270 Rosid View MSA
123741994 5271 Pentapetalae View MSA
122794748 5272 Eudicot View MSA
122048232 5273 Angiosperm View MSA
121348274 5274 Embryophyte View MSA
123425887 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.8537 0.0 31.2193    
cufflinks 11.6612 0.0 30.8005    
cufflinks 9.74276 0.0 26.0444   Low
cufflinks 10.8908 0.0 28.9817    
cufflinks 12.1226 0.0 32.0315    
cufflinks 9.14261 0.0 24.5565   Low
cufflinks 11.7073 0.0 30.8645    
cufflinks 14.2505 0.0 37.1433    
cufflinks 10.8626 0.0 28.8506    
cufflinks 18.2714 0.0 47.346   High
cufflinks 12.4329 0.0 32.7573    

0 Strain