Gene : Phvul.001G253500 P. vulgaris v2.1
Defline:  (1 of 1) PTHR12736:SF14 - LANC-LIKE PROTEIN GCL1 Genomic Order:  2515
Name:  ? Phvul.001G253500 Secondary Identifier:  ? PAC:37170328
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.001G253500 0.5kb upstream 0.5kb upstream 5520 true Chr01: 50363238-50368757 Phaseolus vulgaris
Phvul.001G253500 0.5kb upstream 0.5kb upstream 500 false Chr01: 50368258-50368757 Phaseolus vulgaris
Phvul.001G253500 0.5kb downstream 0.5kb downstream 5520 true Chr01: 50362738-50368257 Phaseolus vulgaris
Phvul.001G253500 0.5kb downstream 0.5kb downstream 500 false Chr01: 50362738-50363237 Phaseolus vulgaris
Phvul.001G253500 1.0kb upstream 1.0kb upstream 6020 true Chr01: 50363238-50369257 Phaseolus vulgaris
Phvul.001G253500 1.0kb upstream 1.0kb upstream 1000 false Chr01: 50368258-50369257 Phaseolus vulgaris
Phvul.001G253500 1.0kb downstream 1.0kb downstream 6020 true Chr01: 50362238-50368257 Phaseolus vulgaris
Phvul.001G253500 1.0kb downstream 1.0kb downstream 1000 false Chr01: 50362238-50363237 Phaseolus vulgaris
Phvul.001G253500 2.0kb upstream 2.0kb upstream 7020 true Chr01: 50363238-50370257 Phaseolus vulgaris
Phvul.001G253500 2.0kb upstream 2.0kb upstream 2000 false Chr01: 50368258-50370257 Phaseolus vulgaris
Phvul.001G253500 2.0kb downstream 2.0kb downstream 7020 true Chr01: 50361238-50368257 Phaseolus vulgaris
Phvul.001G253500 2.0kb downstream 2.0kb downstream 2000 false Chr01: 50361238-50363237 Phaseolus vulgaris
Phvul.001G253500 5.0kb upstream 5.0kb upstream 10020 true Chr01: 50363238-50373257 Phaseolus vulgaris
Phvul.001G253500 5.0kb upstream 5.0kb upstream 5000 false Chr01: 50368258-50373257 Phaseolus vulgaris
Phvul.001G253500 5.0kb downstream 5.0kb downstream 10020 true Chr01: 50358238-50368257 Phaseolus vulgaris
Phvul.001G253500 5.0kb downstream 5.0kb downstream 5000 false Chr01: 50358238-50363237 Phaseolus vulgaris
Phvul.001G253500 10.0kb upstream 10.0kb upstream 15020 true Chr01: 50363238-50378257 Phaseolus vulgaris
Phvul.001G253500 10.0kb upstream 10.0kb upstream 10000 false Chr01: 50368258-50378257 Phaseolus vulgaris
Phvul.001G253500 10.0kb downstream 10.0kb downstream 15020 true Chr01: 50353238-50368257 Phaseolus vulgaris
Phvul.001G253500 10.0kb downstream 10.0kb downstream 10000 false Chr01: 50353238-50363237 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121779196 5273 Angiosperm View MSA
122308648 5265 Fabidae View MSA
124064681 5270 Rosid View MSA
123736678 5271 Pentapetalae View MSA
122769873 5272 Eudicot View MSA
121348546 5274 Embryophyte View MSA
123425935 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.19843 0.0 12.111    
cufflinks 18.0141 0.0 46.6967   High
cufflinks 1.54505 0.0 4.99427   Low
cufflinks 11.4848 0.0 30.4761    
cufflinks 10.8468 0.0 28.8446    
cufflinks 7.38859 0.0 20.2135    
cufflinks 2.04055 0.0 6.37543    
cufflinks 3.16686 0.0 9.41221    
cufflinks 0.80224 0.0 2.79071   Low
cufflinks 2.01082 0.0 6.33616    
cufflinks 11.9272 0.0 31.4896    

0 Strain