Gene : Phvul.002G108900 P. vulgaris v2.1
Defline:  (1 of 1) K08874 - transformation/transcription domain-associated protein (TRRAP) Genomic Order:  1090
Name:  ? Phvul.002G108900 Secondary Identifier:  ? PAC:37177667
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G108900 0.5kb upstream 0.5kb upstream 35045 true Chr02: 23277177-23312221 Phaseolus vulgaris
Phvul.002G108900 0.5kb upstream 0.5kb upstream 500 false Chr02: 23311722-23312221 Phaseolus vulgaris
Phvul.002G108900 0.5kb downstream 0.5kb downstream 35045 true Chr02: 23276677-23311721 Phaseolus vulgaris
Phvul.002G108900 0.5kb downstream 0.5kb downstream 500 false Chr02: 23276677-23277176 Phaseolus vulgaris
Phvul.002G108900 1.0kb upstream 1.0kb upstream 35545 true Chr02: 23277177-23312721 Phaseolus vulgaris
Phvul.002G108900 1.0kb upstream 1.0kb upstream 1000 false Chr02: 23311722-23312721 Phaseolus vulgaris
Phvul.002G108900 1.0kb downstream 1.0kb downstream 35545 true Chr02: 23276177-23311721 Phaseolus vulgaris
Phvul.002G108900 1.0kb downstream 1.0kb downstream 1000 false Chr02: 23276177-23277176 Phaseolus vulgaris
Phvul.002G108900 2.0kb upstream 2.0kb upstream 36545 true Chr02: 23277177-23313721 Phaseolus vulgaris
Phvul.002G108900 2.0kb upstream 2.0kb upstream 2000 false Chr02: 23311722-23313721 Phaseolus vulgaris
Phvul.002G108900 2.0kb downstream 2.0kb downstream 36545 true Chr02: 23275177-23311721 Phaseolus vulgaris
Phvul.002G108900 2.0kb downstream 2.0kb downstream 2000 false Chr02: 23275177-23277176 Phaseolus vulgaris
Phvul.002G108900 5.0kb upstream 5.0kb upstream 39545 true Chr02: 23277177-23316721 Phaseolus vulgaris
Phvul.002G108900 5.0kb upstream 5.0kb upstream 5000 false Chr02: 23311722-23316721 Phaseolus vulgaris
Phvul.002G108900 5.0kb downstream 5.0kb downstream 39545 true Chr02: 23272177-23311721 Phaseolus vulgaris
Phvul.002G108900 5.0kb downstream 5.0kb downstream 5000 false Chr02: 23272177-23277176 Phaseolus vulgaris
Phvul.002G108900 10.0kb upstream 10.0kb upstream 44545 true Chr02: 23277177-23321721 Phaseolus vulgaris
Phvul.002G108900 10.0kb upstream 10.0kb upstream 10000 false Chr02: 23311722-23321721 Phaseolus vulgaris
Phvul.002G108900 10.0kb downstream 10.0kb downstream 44545 true Chr02: 23267177-23311721 Phaseolus vulgaris
Phvul.002G108900 10.0kb downstream 10.0kb downstream 10000 false Chr02: 23267177-23277176 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027431 5273 Angiosperm View MSA
122300725 5265 Fabidae View MSA
124067016 5270 Rosid View MSA
123737923 5271 Pentapetalae View MSA
122791578 5272 Eudicot View MSA
121344769 5274 Embryophyte View MSA
123424018 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.9354 0.0 6.51656   Low
cufflinks 6.55001 0.0 21.3795    
cufflinks 15.2425 0.0 58.9656    
cufflinks 2.51658 0.0 7.34308   Low
cufflinks 11.1722 0.0 39.6657    
cufflinks 16.5794 0.0 56.0926    
cufflinks 14.7379 0.0 55.9904    
cufflinks 13.467 0.0 50.5334    
cufflinks 14.6338 0.0 55.0849    
cufflinks 24.3632 0.0 92.0795   High
cufflinks 6.62753 0.0 21.5486    

0 Strain