Gene : Phvul.002G111600 P. vulgaris v2.1
Defline:  (1 of 2) PTHR22884:SF339 - PHD FINGER, SWIB/MDM2 AND GYF DOMAIN-CONTAINING PROTEIN Genomic Order:  1116
Name:  ? Phvul.002G111600 Secondary Identifier:  ? PAC:37177140
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G111600 0.5kb upstream 0.5kb upstream 7392 true Chr02: 23900457-23907848 Phaseolus vulgaris
Phvul.002G111600 0.5kb upstream 0.5kb upstream 500 false Chr02: 23900457-23900956 Phaseolus vulgaris
Phvul.002G111600 0.5kb downstream 0.5kb downstream 7392 true Chr02: 23900957-23908348 Phaseolus vulgaris
Phvul.002G111600 0.5kb downstream 0.5kb downstream 500 false Chr02: 23907849-23908348 Phaseolus vulgaris
Phvul.002G111600 1.0kb upstream 1.0kb upstream 7892 true Chr02: 23899957-23907848 Phaseolus vulgaris
Phvul.002G111600 1.0kb upstream 1.0kb upstream 1000 false Chr02: 23899957-23900956 Phaseolus vulgaris
Phvul.002G111600 1.0kb downstream 1.0kb downstream 7892 true Chr02: 23900957-23908848 Phaseolus vulgaris
Phvul.002G111600 1.0kb downstream 1.0kb downstream 1000 false Chr02: 23907849-23908848 Phaseolus vulgaris
Phvul.002G111600 2.0kb upstream 2.0kb upstream 8892 true Chr02: 23898957-23907848 Phaseolus vulgaris
Phvul.002G111600 2.0kb upstream 2.0kb upstream 2000 false Chr02: 23898957-23900956 Phaseolus vulgaris
Phvul.002G111600 2.0kb downstream 2.0kb downstream 8892 true Chr02: 23900957-23909848 Phaseolus vulgaris
Phvul.002G111600 2.0kb downstream 2.0kb downstream 2000 false Chr02: 23907849-23909848 Phaseolus vulgaris
Phvul.002G111600 5.0kb upstream 5.0kb upstream 11892 true Chr02: 23895957-23907848 Phaseolus vulgaris
Phvul.002G111600 5.0kb upstream 5.0kb upstream 5000 false Chr02: 23895957-23900956 Phaseolus vulgaris
Phvul.002G111600 5.0kb downstream 5.0kb downstream 11892 true Chr02: 23900957-23912848 Phaseolus vulgaris
Phvul.002G111600 5.0kb downstream 5.0kb downstream 5000 false Chr02: 23907849-23912848 Phaseolus vulgaris
Phvul.002G111600 10.0kb upstream 10.0kb upstream 16892 true Chr02: 23890957-23907848 Phaseolus vulgaris
Phvul.002G111600 10.0kb upstream 10.0kb upstream 10000 false Chr02: 23890957-23900956 Phaseolus vulgaris
Phvul.002G111600 10.0kb downstream 10.0kb downstream 16892 true Chr02: 23900957-23917848 Phaseolus vulgaris
Phvul.002G111600 10.0kb downstream 10.0kb downstream 10000 false Chr02: 23907849-23917848 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306789 5265 Fabidae View MSA
124069496 5270 Rosid View MSA
123753023 5271 Pentapetalae View MSA
122797063 5272 Eudicot View MSA
122044287 5273 Angiosperm View MSA
121348598 5274 Embryophyte View MSA
123380932 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.01895 0.0 23.3201   Low
cufflinks 11.862 0.0 30.8172    
cufflinks 15.6224 0.0 41.1299    
cufflinks 8.09805 0.0 20.9452   Low
cufflinks 13.2615 0.0 34.523    
cufflinks 18.4349 0.0 49.0489    
cufflinks 19.9489 0.0 53.5027   High
cufflinks 15.501 0.0 40.895    
cufflinks 19.5211 0.0 52.1494   High
cufflinks 18.3736 0.0 48.8089    
cufflinks 10.617 0.0 27.4852    

0 Strain