Gene : Phvul.002G104100 P. vulgaris v2.1
Defline:  (1 of 1) K12897 - transformer-2 protein (TRA2) Genomic Order:  1042
Name:  ? Phvul.002G104100 Secondary Identifier:  ? PAC:37178147
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G104100 0.5kb upstream 0.5kb upstream 3345 true Chr02: 22211767-22215111 Phaseolus vulgaris
Phvul.002G104100 0.5kb upstream 0.5kb upstream 500 false Chr02: 22214612-22215111 Phaseolus vulgaris
Phvul.002G104100 0.5kb downstream 0.5kb downstream 3345 true Chr02: 22211267-22214611 Phaseolus vulgaris
Phvul.002G104100 0.5kb downstream 0.5kb downstream 500 false Chr02: 22211267-22211766 Phaseolus vulgaris
Phvul.002G104100 1.0kb upstream 1.0kb upstream 3845 true Chr02: 22211767-22215611 Phaseolus vulgaris
Phvul.002G104100 1.0kb upstream 1.0kb upstream 1000 false Chr02: 22214612-22215611 Phaseolus vulgaris
Phvul.002G104100 1.0kb downstream 1.0kb downstream 3845 true Chr02: 22210767-22214611 Phaseolus vulgaris
Phvul.002G104100 1.0kb downstream 1.0kb downstream 1000 false Chr02: 22210767-22211766 Phaseolus vulgaris
Phvul.002G104100 2.0kb upstream 2.0kb upstream 4845 true Chr02: 22211767-22216611 Phaseolus vulgaris
Phvul.002G104100 2.0kb upstream 2.0kb upstream 2000 false Chr02: 22214612-22216611 Phaseolus vulgaris
Phvul.002G104100 2.0kb downstream 2.0kb downstream 4845 true Chr02: 22209767-22214611 Phaseolus vulgaris
Phvul.002G104100 2.0kb downstream 2.0kb downstream 2000 false Chr02: 22209767-22211766 Phaseolus vulgaris
Phvul.002G104100 5.0kb upstream 5.0kb upstream 7845 true Chr02: 22211767-22219611 Phaseolus vulgaris
Phvul.002G104100 5.0kb upstream 5.0kb upstream 5000 false Chr02: 22214612-22219611 Phaseolus vulgaris
Phvul.002G104100 5.0kb downstream 5.0kb downstream 7845 true Chr02: 22206767-22214611 Phaseolus vulgaris
Phvul.002G104100 5.0kb downstream 5.0kb downstream 5000 false Chr02: 22206767-22211766 Phaseolus vulgaris
Phvul.002G104100 10.0kb upstream 10.0kb upstream 12845 true Chr02: 22211767-22224611 Phaseolus vulgaris
Phvul.002G104100 10.0kb upstream 10.0kb upstream 10000 false Chr02: 22214612-22224611 Phaseolus vulgaris
Phvul.002G104100 10.0kb downstream 10.0kb downstream 12845 true Chr02: 22201767-22214611 Phaseolus vulgaris
Phvul.002G104100 10.0kb downstream 10.0kb downstream 10000 false Chr02: 22201767-22211766 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309837 5265 Fabidae View MSA
124070278 5270 Rosid View MSA
123749009 5271 Pentapetalae View MSA
122794925 5272 Eudicot View MSA
122049449 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121351469 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 46.6886 0.0 120.901 High High
cufflinks 45.4943 0.0 117.745 High High
cufflinks 30.8506 0.0 79.9285    
cufflinks 45.3336 0.0 117.278 High High
cufflinks 36.2481 0.0 93.7467 High  
cufflinks 25.6447 0.0 66.735   Low
cufflinks 37.4289 0.0 96.7469 High  
cufflinks 42.6332 0.0 110.283 High  
cufflinks 39.9671 0.0 103.324 High  
cufflinks 27.3634 0.0 71.1181   Low
cufflinks 34.6548 0.0 89.631 High  

0 Strain