Gene : Phvul.002G094300 P. vulgaris v2.1
Defline:  (1 of 197) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  943
Name:  ? Phvul.002G094300 Secondary Identifier:  ? PAC:37175566
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G094300 0.5kb upstream 0.5kb upstream 5192 true Chr02: 17431717-17436908 Phaseolus vulgaris
Phvul.002G094300 0.5kb upstream 0.5kb upstream 500 false Chr02: 17431717-17432216 Phaseolus vulgaris
Phvul.002G094300 0.5kb downstream 0.5kb downstream 5192 true Chr02: 17432217-17437408 Phaseolus vulgaris
Phvul.002G094300 0.5kb downstream 0.5kb downstream 500 false Chr02: 17436909-17437408 Phaseolus vulgaris
Phvul.002G094300 1.0kb upstream 1.0kb upstream 5692 true Chr02: 17431217-17436908 Phaseolus vulgaris
Phvul.002G094300 1.0kb upstream 1.0kb upstream 1000 false Chr02: 17431217-17432216 Phaseolus vulgaris
Phvul.002G094300 1.0kb downstream 1.0kb downstream 5692 true Chr02: 17432217-17437908 Phaseolus vulgaris
Phvul.002G094300 1.0kb downstream 1.0kb downstream 1000 false Chr02: 17436909-17437908 Phaseolus vulgaris
Phvul.002G094300 2.0kb upstream 2.0kb upstream 6692 true Chr02: 17430217-17436908 Phaseolus vulgaris
Phvul.002G094300 2.0kb upstream 2.0kb upstream 2000 false Chr02: 17430217-17432216 Phaseolus vulgaris
Phvul.002G094300 2.0kb downstream 2.0kb downstream 6692 true Chr02: 17432217-17438908 Phaseolus vulgaris
Phvul.002G094300 2.0kb downstream 2.0kb downstream 2000 false Chr02: 17436909-17438908 Phaseolus vulgaris
Phvul.002G094300 5.0kb upstream 5.0kb upstream 9692 true Chr02: 17427217-17436908 Phaseolus vulgaris
Phvul.002G094300 5.0kb upstream 5.0kb upstream 5000 false Chr02: 17427217-17432216 Phaseolus vulgaris
Phvul.002G094300 5.0kb downstream 5.0kb downstream 9692 true Chr02: 17432217-17441908 Phaseolus vulgaris
Phvul.002G094300 5.0kb downstream 5.0kb downstream 5000 false Chr02: 17436909-17441908 Phaseolus vulgaris
Phvul.002G094300 10.0kb upstream 10.0kb upstream 14692 true Chr02: 17422217-17436908 Phaseolus vulgaris
Phvul.002G094300 10.0kb upstream 10.0kb upstream 10000 false Chr02: 17422217-17432216 Phaseolus vulgaris
Phvul.002G094300 10.0kb downstream 10.0kb downstream 14692 true Chr02: 17432217-17446908 Phaseolus vulgaris
Phvul.002G094300 10.0kb downstream 10.0kb downstream 10000 false Chr02: 17436909-17446908 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303154 5265 Fabidae View MSA
124072513 5270 Rosid View MSA
123747473 5271 Pentapetalae View MSA
122794645 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.443449 0.0 2.57364   Low
cufflinks 1.50726 0.0 6.24751    
cufflinks 2.31257 0.0 8.52715    
cufflinks 0.950502 0.0 4.56268    
cufflinks 1.30715 0.0 5.50411    
cufflinks 3.34232 0.0 11.5092   High
cufflinks 1.61704 0.0 6.93591    
cufflinks 1.80874 0.0 7.26071    
cufflinks 1.14706 0.0 5.15106    
cufflinks 1.55774 0.0 6.39301    
cufflinks 1.10716 0.0 4.99873    

0 Strain