Gene : Phvul.002G062000 P. vulgaris v2.1
Defline:  (1 of 2) 1.1.1.27 - L-lactate dehydrogenase / L-lactic dehydrogenase Genomic Order:  620
Name:  ? Phvul.002G062000 Secondary Identifier:  ? PAC:37175532
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris ANAEROFRUCAT-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-5481 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G062000 0.5kb upstream 0.5kb upstream 1834 true Chr02: 7300276-7302109 Phaseolus vulgaris
Phvul.002G062000 0.5kb upstream 0.5kb upstream 500 false Chr02: 7301610-7302109 Phaseolus vulgaris
Phvul.002G062000 0.5kb downstream 0.5kb downstream 1834 true Chr02: 7299776-7301609 Phaseolus vulgaris
Phvul.002G062000 0.5kb downstream 0.5kb downstream 500 false Chr02: 7299776-7300275 Phaseolus vulgaris
Phvul.002G062000 1.0kb upstream 1.0kb upstream 2334 true Chr02: 7300276-7302609 Phaseolus vulgaris
Phvul.002G062000 1.0kb upstream 1.0kb upstream 1000 false Chr02: 7301610-7302609 Phaseolus vulgaris
Phvul.002G062000 1.0kb downstream 1.0kb downstream 2334 true Chr02: 7299276-7301609 Phaseolus vulgaris
Phvul.002G062000 1.0kb downstream 1.0kb downstream 1000 false Chr02: 7299276-7300275 Phaseolus vulgaris
Phvul.002G062000 2.0kb upstream 2.0kb upstream 3334 true Chr02: 7300276-7303609 Phaseolus vulgaris
Phvul.002G062000 2.0kb upstream 2.0kb upstream 2000 false Chr02: 7301610-7303609 Phaseolus vulgaris
Phvul.002G062000 2.0kb downstream 2.0kb downstream 3334 true Chr02: 7298276-7301609 Phaseolus vulgaris
Phvul.002G062000 2.0kb downstream 2.0kb downstream 2000 false Chr02: 7298276-7300275 Phaseolus vulgaris
Phvul.002G062000 5.0kb upstream 5.0kb upstream 6334 true Chr02: 7300276-7306609 Phaseolus vulgaris
Phvul.002G062000 5.0kb upstream 5.0kb upstream 5000 false Chr02: 7301610-7306609 Phaseolus vulgaris
Phvul.002G062000 5.0kb downstream 5.0kb downstream 6334 true Chr02: 7295276-7301609 Phaseolus vulgaris
Phvul.002G062000 5.0kb downstream 5.0kb downstream 5000 false Chr02: 7295276-7300275 Phaseolus vulgaris
Phvul.002G062000 10.0kb upstream 10.0kb upstream 11334 true Chr02: 7300276-7311609 Phaseolus vulgaris
Phvul.002G062000 10.0kb upstream 10.0kb upstream 10000 false Chr02: 7301610-7311609 Phaseolus vulgaris
Phvul.002G062000 10.0kb downstream 10.0kb downstream 11334 true Chr02: 7290276-7301609 Phaseolus vulgaris
Phvul.002G062000 10.0kb downstream 10.0kb downstream 10000 false Chr02: 7290276-7300275 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302762 5265 Fabidae View MSA
124064441 5270 Rosid View MSA
123739146 5271 Pentapetalae View MSA
122785845 5272 Eudicot View MSA
122045770 5273 Angiosperm View MSA
121350532 5274 Embryophyte View MSA
123381776 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.768453 0.0 2.81614   High
cufflinks 0.104279 0.0 0.451361 Low  
cufflinks 0.0499934 0.0 0.233504 Low  
cufflinks 1.4623 0.0 5.0131   High
cufflinks 0.0449981 0.0 0.211291 Low  
cufflinks 0.572046 0.0 2.15187    
cufflinks 0.532306 0.0 2.00663 Low  
cufflinks 0.297172 0.0 1.17652 Low  
cufflinks 0.0323625 0.0 0.15719 Low Low
cufflinks 0.0146747 0.0 0.0784932 Low Low
cufflinks 0.273989 0.0 1.09164 Low  

0 Strain