Gene : Phvul.002G066000 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11618//PTHR11618:SF23 - TRANSCRIPTION INITIATION FACTOR IIB-RELATED // SUBFAMILY NOT NAMED Genomic Order:  696
Name:  ? Phvul.002G066000 Secondary Identifier:  ? PAC:37175405
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G066000 0.5kb upstream 0.5kb upstream 2404 true Chr02: 9163764-9166167 Phaseolus vulgaris
Phvul.002G066000 0.5kb upstream 0.5kb upstream 500 false Chr02: 9165668-9166167 Phaseolus vulgaris
Phvul.002G066000 0.5kb downstream 0.5kb downstream 2404 true Chr02: 9163264-9165667 Phaseolus vulgaris
Phvul.002G066000 0.5kb downstream 0.5kb downstream 500 false Chr02: 9163264-9163763 Phaseolus vulgaris
Phvul.002G066000 1.0kb upstream 1.0kb upstream 2904 true Chr02: 9163764-9166667 Phaseolus vulgaris
Phvul.002G066000 1.0kb upstream 1.0kb upstream 1000 false Chr02: 9165668-9166667 Phaseolus vulgaris
Phvul.002G066000 1.0kb downstream 1.0kb downstream 2904 true Chr02: 9162764-9165667 Phaseolus vulgaris
Phvul.002G066000 1.0kb downstream 1.0kb downstream 1000 false Chr02: 9162764-9163763 Phaseolus vulgaris
Phvul.002G066000 2.0kb upstream 2.0kb upstream 3904 true Chr02: 9163764-9167667 Phaseolus vulgaris
Phvul.002G066000 2.0kb upstream 2.0kb upstream 2000 false Chr02: 9165668-9167667 Phaseolus vulgaris
Phvul.002G066000 2.0kb downstream 2.0kb downstream 3904 true Chr02: 9161764-9165667 Phaseolus vulgaris
Phvul.002G066000 2.0kb downstream 2.0kb downstream 2000 false Chr02: 9161764-9163763 Phaseolus vulgaris
Phvul.002G066000 5.0kb upstream 5.0kb upstream 6904 true Chr02: 9163764-9170667 Phaseolus vulgaris
Phvul.002G066000 5.0kb upstream 5.0kb upstream 5000 false Chr02: 9165668-9170667 Phaseolus vulgaris
Phvul.002G066000 5.0kb downstream 5.0kb downstream 6904 true Chr02: 9158764-9165667 Phaseolus vulgaris
Phvul.002G066000 5.0kb downstream 5.0kb downstream 5000 false Chr02: 9158764-9163763 Phaseolus vulgaris
Phvul.002G066000 10.0kb upstream 10.0kb upstream 11904 true Chr02: 9163764-9175667 Phaseolus vulgaris
Phvul.002G066000 10.0kb upstream 10.0kb upstream 10000 false Chr02: 9165668-9175667 Phaseolus vulgaris
Phvul.002G066000 10.0kb downstream 10.0kb downstream 11904 true Chr02: 9153764-9165667 Phaseolus vulgaris
Phvul.002G066000 10.0kb downstream 10.0kb downstream 10000 false Chr02: 9153764-9163763 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303484 5265 Fabidae View MSA
124067498 5270 Rosid View MSA
123742191 5271 Pentapetalae View MSA
122787938 5272 Eudicot View MSA
122042980 5273 Angiosperm View MSA
121346449 5274 Embryophyte View MSA
123427604 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.18919 0.0 14.3678    
cufflinks 6.65714 0.0 18.0627    
cufflinks 4.34554 0.0 12.2828   Low
cufflinks 9.65355 0.0 25.6317   High
cufflinks 5.83801 0.0 16.0585    
cufflinks 4.20113 0.0 11.8791   Low
cufflinks 4.73924 0.0 13.2126    
cufflinks 5.5847 0.0 15.3769    
cufflinks 5.43483 0.0 15.0167    
cufflinks 8.34851 0.0 22.2511   High
cufflinks 6.16552 0.0 16.8169    

0 Strain