Gene : Phvul.002G053200 P. vulgaris v2.1
Defline:  (1 of 1) K03515 - DNA repair protein REV1 (REV1) Genomic Order:  531
Name:  ? Phvul.002G053200 Secondary Identifier:  ? PAC:37177959
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G053200 0.5kb upstream 0.5kb upstream 12296 true Chr02: 4842190-4854485 Phaseolus vulgaris
Phvul.002G053200 0.5kb upstream 0.5kb upstream 500 false Chr02: 4842190-4842689 Phaseolus vulgaris
Phvul.002G053200 0.5kb downstream 0.5kb downstream 12296 true Chr02: 4842690-4854985 Phaseolus vulgaris
Phvul.002G053200 0.5kb downstream 0.5kb downstream 500 false Chr02: 4854486-4854985 Phaseolus vulgaris
Phvul.002G053200 1.0kb upstream 1.0kb upstream 12796 true Chr02: 4841690-4854485 Phaseolus vulgaris
Phvul.002G053200 1.0kb upstream 1.0kb upstream 1000 false Chr02: 4841690-4842689 Phaseolus vulgaris
Phvul.002G053200 1.0kb downstream 1.0kb downstream 12796 true Chr02: 4842690-4855485 Phaseolus vulgaris
Phvul.002G053200 1.0kb downstream 1.0kb downstream 1000 false Chr02: 4854486-4855485 Phaseolus vulgaris
Phvul.002G053200 2.0kb upstream 2.0kb upstream 13796 true Chr02: 4840690-4854485 Phaseolus vulgaris
Phvul.002G053200 2.0kb upstream 2.0kb upstream 2000 false Chr02: 4840690-4842689 Phaseolus vulgaris
Phvul.002G053200 2.0kb downstream 2.0kb downstream 13796 true Chr02: 4842690-4856485 Phaseolus vulgaris
Phvul.002G053200 2.0kb downstream 2.0kb downstream 2000 false Chr02: 4854486-4856485 Phaseolus vulgaris
Phvul.002G053200 5.0kb upstream 5.0kb upstream 16796 true Chr02: 4837690-4854485 Phaseolus vulgaris
Phvul.002G053200 5.0kb upstream 5.0kb upstream 5000 false Chr02: 4837690-4842689 Phaseolus vulgaris
Phvul.002G053200 5.0kb downstream 5.0kb downstream 16796 true Chr02: 4842690-4859485 Phaseolus vulgaris
Phvul.002G053200 5.0kb downstream 5.0kb downstream 5000 false Chr02: 4854486-4859485 Phaseolus vulgaris
Phvul.002G053200 10.0kb upstream 10.0kb upstream 21796 true Chr02: 4832690-4854485 Phaseolus vulgaris
Phvul.002G053200 10.0kb upstream 10.0kb upstream 10000 false Chr02: 4832690-4842689 Phaseolus vulgaris
Phvul.002G053200 10.0kb downstream 10.0kb downstream 21796 true Chr02: 4842690-4864485 Phaseolus vulgaris
Phvul.002G053200 10.0kb downstream 10.0kb downstream 10000 false Chr02: 4854486-4864485 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306919 5265 Fabidae View MSA
124061575 5270 Rosid View MSA
123740211 5271 Pentapetalae View MSA
122789510 5272 Eudicot View MSA
122041911 5273 Angiosperm View MSA
121346043 5274 Embryophyte View MSA
123380311 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.975453 0.0 3.08153    
cufflinks 1.15321 0.0 3.58111    
cufflinks 2.67048 0.0 7.52834    
cufflinks 0.67608 0.0 2.2498   Low
cufflinks 1.90483 0.0 5.63587    
cufflinks 1.50815 0.0 4.53476    
cufflinks 5.22758 0.0 13.9882   High
cufflinks 11.9205 0.0 30.814   High
cufflinks 3.41543 0.0 9.49268    
cufflinks 4.34649 0.0 11.783    
cufflinks 1.12519 0.0 3.53115    

0 Strain