Gene : Phvul.002G053600 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11079:SF58 - RNA PSEUDOURIDINE SYNTHASE 4, MITOCHONDRIAL Genomic Order:  535
Name:  ? Phvul.002G053600 Secondary Identifier:  ? PAC:37177683
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G053600 0.5kb upstream 0.5kb upstream 4801 true Chr02: 4867855-4872655 Phaseolus vulgaris
Phvul.002G053600 0.5kb upstream 0.5kb upstream 500 false Chr02: 4867855-4868354 Phaseolus vulgaris
Phvul.002G053600 0.5kb downstream 0.5kb downstream 4801 true Chr02: 4868355-4873155 Phaseolus vulgaris
Phvul.002G053600 0.5kb downstream 0.5kb downstream 500 false Chr02: 4872656-4873155 Phaseolus vulgaris
Phvul.002G053600 1.0kb upstream 1.0kb upstream 5301 true Chr02: 4867355-4872655 Phaseolus vulgaris
Phvul.002G053600 1.0kb upstream 1.0kb upstream 1000 false Chr02: 4867355-4868354 Phaseolus vulgaris
Phvul.002G053600 1.0kb downstream 1.0kb downstream 5301 true Chr02: 4868355-4873655 Phaseolus vulgaris
Phvul.002G053600 1.0kb downstream 1.0kb downstream 1000 false Chr02: 4872656-4873655 Phaseolus vulgaris
Phvul.002G053600 2.0kb upstream 2.0kb upstream 6301 true Chr02: 4866355-4872655 Phaseolus vulgaris
Phvul.002G053600 2.0kb upstream 2.0kb upstream 2000 false Chr02: 4866355-4868354 Phaseolus vulgaris
Phvul.002G053600 2.0kb downstream 2.0kb downstream 6301 true Chr02: 4868355-4874655 Phaseolus vulgaris
Phvul.002G053600 2.0kb downstream 2.0kb downstream 2000 false Chr02: 4872656-4874655 Phaseolus vulgaris
Phvul.002G053600 5.0kb upstream 5.0kb upstream 9301 true Chr02: 4863355-4872655 Phaseolus vulgaris
Phvul.002G053600 5.0kb upstream 5.0kb upstream 5000 false Chr02: 4863355-4868354 Phaseolus vulgaris
Phvul.002G053600 5.0kb downstream 5.0kb downstream 9301 true Chr02: 4868355-4877655 Phaseolus vulgaris
Phvul.002G053600 5.0kb downstream 5.0kb downstream 5000 false Chr02: 4872656-4877655 Phaseolus vulgaris
Phvul.002G053600 10.0kb upstream 10.0kb upstream 14301 true Chr02: 4858355-4872655 Phaseolus vulgaris
Phvul.002G053600 10.0kb upstream 10.0kb upstream 10000 false Chr02: 4858355-4868354 Phaseolus vulgaris
Phvul.002G053600 10.0kb downstream 10.0kb downstream 14301 true Chr02: 4868355-4882655 Phaseolus vulgaris
Phvul.002G053600 10.0kb downstream 10.0kb downstream 10000 false Chr02: 4872656-4882655 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307711 5265 Fabidae View MSA
124062896 5270 Rosid View MSA
123739402 5271 Pentapetalae View MSA
122789155 5272 Eudicot View MSA
122044884 5273 Angiosperm View MSA
121348863 5274 Embryophyte View MSA
123426669 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.77133 0.0 8.61    
cufflinks 2.60072 0.0 8.12329    
cufflinks 2.96197 0.0 9.11469    
cufflinks 2.41605 0.0 7.62916    
cufflinks 3.21304 0.0 9.83888   High
cufflinks 2.2207 0.0 7.06932    
cufflinks 2.76305 0.0 8.56491    
cufflinks 3.12942 0.0 9.5612    
cufflinks 3.18447 0.0 9.69411    
cufflinks 1.60603 0.0 5.29588   Low
cufflinks 2.16301 0.0 6.91036    

0 Strain