Gene : Phvul.002G170200 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31719:SF40 - NAC TRANSCRIPTION FACTOR 29 Genomic Order:  1719
Name:  ? Phvul.002G170200 Secondary Identifier:  ? PAC:37175364
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G170200 0.5kb upstream 0.5kb upstream 2181 true Chr02: 33079285-33081465 Phaseolus vulgaris
Phvul.002G170200 0.5kb upstream 0.5kb upstream 500 false Chr02: 33080966-33081465 Phaseolus vulgaris
Phvul.002G170200 0.5kb downstream 0.5kb downstream 2181 true Chr02: 33078785-33080965 Phaseolus vulgaris
Phvul.002G170200 0.5kb downstream 0.5kb downstream 500 false Chr02: 33078785-33079284 Phaseolus vulgaris
Phvul.002G170200 1.0kb upstream 1.0kb upstream 2681 true Chr02: 33079285-33081965 Phaseolus vulgaris
Phvul.002G170200 1.0kb upstream 1.0kb upstream 1000 false Chr02: 33080966-33081965 Phaseolus vulgaris
Phvul.002G170200 1.0kb downstream 1.0kb downstream 2681 true Chr02: 33078285-33080965 Phaseolus vulgaris
Phvul.002G170200 1.0kb downstream 1.0kb downstream 1000 false Chr02: 33078285-33079284 Phaseolus vulgaris
Phvul.002G170200 2.0kb upstream 2.0kb upstream 3681 true Chr02: 33079285-33082965 Phaseolus vulgaris
Phvul.002G170200 2.0kb upstream 2.0kb upstream 2000 false Chr02: 33080966-33082965 Phaseolus vulgaris
Phvul.002G170200 2.0kb downstream 2.0kb downstream 3681 true Chr02: 33077285-33080965 Phaseolus vulgaris
Phvul.002G170200 2.0kb downstream 2.0kb downstream 2000 false Chr02: 33077285-33079284 Phaseolus vulgaris
Phvul.002G170200 5.0kb upstream 5.0kb upstream 6681 true Chr02: 33079285-33085965 Phaseolus vulgaris
Phvul.002G170200 5.0kb upstream 5.0kb upstream 5000 false Chr02: 33080966-33085965 Phaseolus vulgaris
Phvul.002G170200 5.0kb downstream 5.0kb downstream 6681 true Chr02: 33074285-33080965 Phaseolus vulgaris
Phvul.002G170200 5.0kb downstream 5.0kb downstream 5000 false Chr02: 33074285-33079284 Phaseolus vulgaris
Phvul.002G170200 10.0kb upstream 10.0kb upstream 11681 true Chr02: 33079285-33090965 Phaseolus vulgaris
Phvul.002G170200 10.0kb upstream 10.0kb upstream 10000 false Chr02: 33080966-33090965 Phaseolus vulgaris
Phvul.002G170200 10.0kb downstream 10.0kb downstream 11681 true Chr02: 33069285-33080965 Phaseolus vulgaris
Phvul.002G170200 10.0kb downstream 10.0kb downstream 10000 false Chr02: 33069285-33079284 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297729 5265 Fabidae View MSA
124065483 5270 Rosid View MSA
123736663 5271 Pentapetalae View MSA
122792841 5272 Eudicot View MSA
122049237 5273 Angiosperm View MSA
121349958 5274 Embryophyte View MSA
123381516 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 71.17 0.0 187.003 High High
cufflinks 48.181 0.0 124.713 High High
cufflinks 0.048841 0.0 0.228122 Low Low
cufflinks 1.52118 0.0 5.27566    
cufflinks 0.249139 0.0 1.00705 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.07155 0.0 3.81969    
cufflinks 0.803096 0.0 2.92715    
cufflinks 0.755891 0.0 2.78417    
cufflinks 0.974499 0.0 3.52217    
cufflinks 1.22209 0.0 4.33668    

0 Strain