Gene : Phvul.002G154500 P. vulgaris v2.1
Defline:  (1 of 13) K08912 - light-harvesting complex II chlorophyll a/b binding protein 1 (LHCB1) Genomic Order:  1549
Name:  ? Phvul.002G154500 Secondary Identifier:  ? PAC:37176822
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G154500 0.5kb upstream 0.5kb upstream 1713 true Chr02: 30882375-30884087 Phaseolus vulgaris
Phvul.002G154500 0.5kb upstream 0.5kb upstream 500 false Chr02: 30883588-30884087 Phaseolus vulgaris
Phvul.002G154500 0.5kb downstream 0.5kb downstream 1713 true Chr02: 30881875-30883587 Phaseolus vulgaris
Phvul.002G154500 0.5kb downstream 0.5kb downstream 500 false Chr02: 30881875-30882374 Phaseolus vulgaris
Phvul.002G154500 1.0kb upstream 1.0kb upstream 2213 true Chr02: 30882375-30884587 Phaseolus vulgaris
Phvul.002G154500 1.0kb upstream 1.0kb upstream 1000 false Chr02: 30883588-30884587 Phaseolus vulgaris
Phvul.002G154500 1.0kb downstream 1.0kb downstream 2213 true Chr02: 30881375-30883587 Phaseolus vulgaris
Phvul.002G154500 1.0kb downstream 1.0kb downstream 1000 false Chr02: 30881375-30882374 Phaseolus vulgaris
Phvul.002G154500 2.0kb upstream 2.0kb upstream 3213 true Chr02: 30882375-30885587 Phaseolus vulgaris
Phvul.002G154500 2.0kb upstream 2.0kb upstream 2000 false Chr02: 30883588-30885587 Phaseolus vulgaris
Phvul.002G154500 2.0kb downstream 2.0kb downstream 3213 true Chr02: 30880375-30883587 Phaseolus vulgaris
Phvul.002G154500 2.0kb downstream 2.0kb downstream 2000 false Chr02: 30880375-30882374 Phaseolus vulgaris
Phvul.002G154500 5.0kb upstream 5.0kb upstream 6213 true Chr02: 30882375-30888587 Phaseolus vulgaris
Phvul.002G154500 5.0kb upstream 5.0kb upstream 5000 false Chr02: 30883588-30888587 Phaseolus vulgaris
Phvul.002G154500 5.0kb downstream 5.0kb downstream 6213 true Chr02: 30877375-30883587 Phaseolus vulgaris
Phvul.002G154500 5.0kb downstream 5.0kb downstream 5000 false Chr02: 30877375-30882374 Phaseolus vulgaris
Phvul.002G154500 10.0kb upstream 10.0kb upstream 11213 true Chr02: 30882375-30893587 Phaseolus vulgaris
Phvul.002G154500 10.0kb upstream 10.0kb upstream 10000 false Chr02: 30883588-30893587 Phaseolus vulgaris
Phvul.002G154500 10.0kb downstream 10.0kb downstream 11213 true Chr02: 30872375-30883587 Phaseolus vulgaris
Phvul.002G154500 10.0kb downstream 10.0kb downstream 10000 false Chr02: 30872375-30882374 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122315595 5265 Fabidae View MSA
124072480 5270 Rosid View MSA
123751711 5271 Pentapetalae View MSA
122794402 5272 Eudicot View MSA
122050341 5273 Angiosperm View MSA
121349648 5274 Embryophyte View MSA
123426313 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 296.034 0.0 904.288 High  
cufflinks 1131.82 0.0 4643.84 High  
cufflinks 7840.34 0.0 57142.3 High High
cufflinks 461.325 0.0 1522.96 High  
cufflinks 975.331 0.0 3892.7 High  
cufflinks 3152.63 0.0 17351.0 High  
cufflinks 1.14726 0.0 4.08035   Low
cufflinks 0.21587 0.0 0.88219 Low Low
cufflinks 0.804186 0.0 2.96204   Low
cufflinks 159.614 0.0 447.24 High  
cufflinks 391.047 0.0 1249.16 High  

0 Strain