Gene : Phvul.002G157500 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10694:SF8 - LYSINE-SPECIFIC DEMETHYLASE LID Genomic Order:  1579
Name:  ? Phvul.002G157500 Secondary Identifier:  ? PAC:37177918
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G157500 0.5kb upstream 0.5kb upstream 19958 true Chr02: 31196429-31216386 Phaseolus vulgaris
Phvul.002G157500 0.5kb upstream 0.5kb upstream 500 false Chr02: 31215887-31216386 Phaseolus vulgaris
Phvul.002G157500 0.5kb downstream 0.5kb downstream 19958 true Chr02: 31195929-31215886 Phaseolus vulgaris
Phvul.002G157500 0.5kb downstream 0.5kb downstream 500 false Chr02: 31195929-31196428 Phaseolus vulgaris
Phvul.002G157500 1.0kb upstream 1.0kb upstream 20458 true Chr02: 31196429-31216886 Phaseolus vulgaris
Phvul.002G157500 1.0kb upstream 1.0kb upstream 1000 false Chr02: 31215887-31216886 Phaseolus vulgaris
Phvul.002G157500 1.0kb downstream 1.0kb downstream 20458 true Chr02: 31195429-31215886 Phaseolus vulgaris
Phvul.002G157500 1.0kb downstream 1.0kb downstream 1000 false Chr02: 31195429-31196428 Phaseolus vulgaris
Phvul.002G157500 2.0kb upstream 2.0kb upstream 21458 true Chr02: 31196429-31217886 Phaseolus vulgaris
Phvul.002G157500 2.0kb upstream 2.0kb upstream 2000 false Chr02: 31215887-31217886 Phaseolus vulgaris
Phvul.002G157500 2.0kb downstream 2.0kb downstream 21458 true Chr02: 31194429-31215886 Phaseolus vulgaris
Phvul.002G157500 2.0kb downstream 2.0kb downstream 2000 false Chr02: 31194429-31196428 Phaseolus vulgaris
Phvul.002G157500 5.0kb upstream 5.0kb upstream 24458 true Chr02: 31196429-31220886 Phaseolus vulgaris
Phvul.002G157500 5.0kb upstream 5.0kb upstream 5000 false Chr02: 31215887-31220886 Phaseolus vulgaris
Phvul.002G157500 5.0kb downstream 5.0kb downstream 24458 true Chr02: 31191429-31215886 Phaseolus vulgaris
Phvul.002G157500 5.0kb downstream 5.0kb downstream 5000 false Chr02: 31191429-31196428 Phaseolus vulgaris
Phvul.002G157500 10.0kb upstream 10.0kb upstream 29458 true Chr02: 31196429-31225886 Phaseolus vulgaris
Phvul.002G157500 10.0kb upstream 10.0kb upstream 10000 false Chr02: 31215887-31225886 Phaseolus vulgaris
Phvul.002G157500 10.0kb downstream 10.0kb downstream 29458 true Chr02: 31186429-31215886 Phaseolus vulgaris
Phvul.002G157500 10.0kb downstream 10.0kb downstream 10000 false Chr02: 31186429-31196428 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307767 5265 Fabidae View MSA
124062119 5270 Rosid View MSA
123738333 5271 Pentapetalae View MSA
122792222 5272 Eudicot View MSA
122044842 5273 Angiosperm View MSA
121344507 5274 Embryophyte View MSA
123426516 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.04957 0.0 5.65437   Low
cufflinks 4.63975 0.0 12.0958    
cufflinks 9.78484 0.0 25.4355    
cufflinks 2.46278 0.0 6.75659   Low
cufflinks 5.53313 0.0 14.363    
cufflinks 10.2893 0.0 26.7619    
cufflinks 9.10804 0.0 23.5967    
cufflinks 7.90106 0.0 20.439    
cufflinks 7.98468 0.0 20.642    
cufflinks 9.88503 0.0 25.6647    
cufflinks 4.24691 0.0 11.1446    

0 Strain