Gene : Phvul.002G146800 P. vulgaris v2.1
Defline:  (1 of 2) PTHR13060 - SGT1 PROTEIN HSGT1 SUPPRESSOR OF GCR2 Genomic Order:  1471
Name:  ? Phvul.002G146800 Secondary Identifier:  ? PAC:37176921
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G146800 0.5kb upstream 0.5kb upstream 6876 true Chr02: 29652293-29659168 Phaseolus vulgaris
Phvul.002G146800 0.5kb upstream 0.5kb upstream 500 false Chr02: 29652293-29652792 Phaseolus vulgaris
Phvul.002G146800 0.5kb downstream 0.5kb downstream 6876 true Chr02: 29652793-29659668 Phaseolus vulgaris
Phvul.002G146800 0.5kb downstream 0.5kb downstream 500 false Chr02: 29659169-29659668 Phaseolus vulgaris
Phvul.002G146800 1.0kb upstream 1.0kb upstream 7376 true Chr02: 29651793-29659168 Phaseolus vulgaris
Phvul.002G146800 1.0kb upstream 1.0kb upstream 1000 false Chr02: 29651793-29652792 Phaseolus vulgaris
Phvul.002G146800 1.0kb downstream 1.0kb downstream 7376 true Chr02: 29652793-29660168 Phaseolus vulgaris
Phvul.002G146800 1.0kb downstream 1.0kb downstream 1000 false Chr02: 29659169-29660168 Phaseolus vulgaris
Phvul.002G146800 2.0kb upstream 2.0kb upstream 8376 true Chr02: 29650793-29659168 Phaseolus vulgaris
Phvul.002G146800 2.0kb upstream 2.0kb upstream 2000 false Chr02: 29650793-29652792 Phaseolus vulgaris
Phvul.002G146800 2.0kb downstream 2.0kb downstream 8376 true Chr02: 29652793-29661168 Phaseolus vulgaris
Phvul.002G146800 2.0kb downstream 2.0kb downstream 2000 false Chr02: 29659169-29661168 Phaseolus vulgaris
Phvul.002G146800 5.0kb upstream 5.0kb upstream 11376 true Chr02: 29647793-29659168 Phaseolus vulgaris
Phvul.002G146800 5.0kb upstream 5.0kb upstream 5000 false Chr02: 29647793-29652792 Phaseolus vulgaris
Phvul.002G146800 5.0kb downstream 5.0kb downstream 11376 true Chr02: 29652793-29664168 Phaseolus vulgaris
Phvul.002G146800 5.0kb downstream 5.0kb downstream 5000 false Chr02: 29659169-29664168 Phaseolus vulgaris
Phvul.002G146800 10.0kb upstream 10.0kb upstream 16376 true Chr02: 29642793-29659168 Phaseolus vulgaris
Phvul.002G146800 10.0kb upstream 10.0kb upstream 10000 false Chr02: 29642793-29652792 Phaseolus vulgaris
Phvul.002G146800 10.0kb downstream 10.0kb downstream 16376 true Chr02: 29652793-29669168 Phaseolus vulgaris
Phvul.002G146800 10.0kb downstream 10.0kb downstream 10000 false Chr02: 29659169-29669168 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301816 5265 Fabidae View MSA
124072194 5270 Rosid View MSA
123740362 5271 Pentapetalae View MSA
122792261 5272 Eudicot View MSA
122046439 5273 Angiosperm View MSA
121348661 5274 Embryophyte View MSA
123424797 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.2569 0.0 24.3965   Low
cufflinks 11.3245 0.0 36.3048    
cufflinks 9.14945 0.0 30.0232    
cufflinks 7.87665 0.0 26.2992    
cufflinks 11.9752 0.0 38.2219    
cufflinks 9.3817 0.0 30.5978    
cufflinks 10.525 0.0 33.7832    
cufflinks 10.5583 0.0 34.0185    
cufflinks 10.4702 0.0 33.6885    
cufflinks 24.8441 0.0 80.3819   High
cufflinks 13.7065 0.0 43.5265    

0 Strain