Gene : Phvul.002G137400 P. vulgaris v2.1
Defline:  (1 of 1) PTHR21087:SF0 - INACTIVE SHIKIMATE KINASE LIKE 2, CHLOROPLASTIC-RELATED Genomic Order:  1376
Name:  ? Phvul.002G137400 Secondary Identifier:  ? PAC:37178529
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G137400 0.5kb upstream 0.5kb upstream 4749 true Chr02: 28342014-28346762 Phaseolus vulgaris
Phvul.002G137400 0.5kb upstream 0.5kb upstream 500 false Chr02: 28342014-28342513 Phaseolus vulgaris
Phvul.002G137400 0.5kb downstream 0.5kb downstream 4749 true Chr02: 28342514-28347262 Phaseolus vulgaris
Phvul.002G137400 0.5kb downstream 0.5kb downstream 500 false Chr02: 28346763-28347262 Phaseolus vulgaris
Phvul.002G137400 1.0kb upstream 1.0kb upstream 5249 true Chr02: 28341514-28346762 Phaseolus vulgaris
Phvul.002G137400 1.0kb upstream 1.0kb upstream 1000 false Chr02: 28341514-28342513 Phaseolus vulgaris
Phvul.002G137400 1.0kb downstream 1.0kb downstream 5249 true Chr02: 28342514-28347762 Phaseolus vulgaris
Phvul.002G137400 1.0kb downstream 1.0kb downstream 1000 false Chr02: 28346763-28347762 Phaseolus vulgaris
Phvul.002G137400 2.0kb upstream 2.0kb upstream 6249 true Chr02: 28340514-28346762 Phaseolus vulgaris
Phvul.002G137400 2.0kb upstream 2.0kb upstream 2000 false Chr02: 28340514-28342513 Phaseolus vulgaris
Phvul.002G137400 2.0kb downstream 2.0kb downstream 6249 true Chr02: 28342514-28348762 Phaseolus vulgaris
Phvul.002G137400 2.0kb downstream 2.0kb downstream 2000 false Chr02: 28346763-28348762 Phaseolus vulgaris
Phvul.002G137400 5.0kb upstream 5.0kb upstream 9249 true Chr02: 28337514-28346762 Phaseolus vulgaris
Phvul.002G137400 5.0kb upstream 5.0kb upstream 5000 false Chr02: 28337514-28342513 Phaseolus vulgaris
Phvul.002G137400 5.0kb downstream 5.0kb downstream 9249 true Chr02: 28342514-28351762 Phaseolus vulgaris
Phvul.002G137400 5.0kb downstream 5.0kb downstream 5000 false Chr02: 28346763-28351762 Phaseolus vulgaris
Phvul.002G137400 10.0kb upstream 10.0kb upstream 14249 true Chr02: 28332514-28346762 Phaseolus vulgaris
Phvul.002G137400 10.0kb upstream 10.0kb upstream 10000 false Chr02: 28332514-28342513 Phaseolus vulgaris
Phvul.002G137400 10.0kb downstream 10.0kb downstream 14249 true Chr02: 28342514-28356762 Phaseolus vulgaris
Phvul.002G137400 10.0kb downstream 10.0kb downstream 10000 false Chr02: 28346763-28356762 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300918 5265 Fabidae View MSA
124072915 5270 Rosid View MSA
123746382 5271 Pentapetalae View MSA
122790414 5272 Eudicot View MSA
122043641 5273 Angiosperm View MSA
121347570 5274 Embryophyte View MSA
123427676 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.52045 0.0 23.7212    
cufflinks 9.76317 0.0 26.8527    
cufflinks 40.3016 0.0 104.465 High High
cufflinks 9.31342 0.0 25.8305    
cufflinks 5.84873 0.0 16.9979    
cufflinks 26.0136 0.0 67.3773   High
cufflinks 3.22474 0.0 9.949   Low
cufflinks 3.69324 0.0 11.1674    
cufflinks 2.48807 0.0 7.90829   Low
cufflinks 9.05716 0.0 25.1151    
cufflinks 5.54788 0.0 16.1951    

0 Strain