Gene : Phvul.002G122400 P. vulgaris v2.1
Defline:  (1 of 1) PTHR13586:SF3 - DECAPPING 5-LIKE PROTEIN-RELATED Genomic Order:  1225
Name:  ? Phvul.002G122400 Secondary Identifier:  ? PAC:37175975
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G122400 0.5kb upstream 0.5kb upstream 7105 true Chr02: 26055093-26062197 Phaseolus vulgaris
Phvul.002G122400 0.5kb upstream 0.5kb upstream 500 false Chr02: 26055093-26055592 Phaseolus vulgaris
Phvul.002G122400 0.5kb downstream 0.5kb downstream 7105 true Chr02: 26055593-26062697 Phaseolus vulgaris
Phvul.002G122400 0.5kb downstream 0.5kb downstream 500 false Chr02: 26062198-26062697 Phaseolus vulgaris
Phvul.002G122400 1.0kb upstream 1.0kb upstream 7605 true Chr02: 26054593-26062197 Phaseolus vulgaris
Phvul.002G122400 1.0kb upstream 1.0kb upstream 1000 false Chr02: 26054593-26055592 Phaseolus vulgaris
Phvul.002G122400 1.0kb downstream 1.0kb downstream 7605 true Chr02: 26055593-26063197 Phaseolus vulgaris
Phvul.002G122400 1.0kb downstream 1.0kb downstream 1000 false Chr02: 26062198-26063197 Phaseolus vulgaris
Phvul.002G122400 2.0kb upstream 2.0kb upstream 8605 true Chr02: 26053593-26062197 Phaseolus vulgaris
Phvul.002G122400 2.0kb upstream 2.0kb upstream 2000 false Chr02: 26053593-26055592 Phaseolus vulgaris
Phvul.002G122400 2.0kb downstream 2.0kb downstream 8605 true Chr02: 26055593-26064197 Phaseolus vulgaris
Phvul.002G122400 2.0kb downstream 2.0kb downstream 2000 false Chr02: 26062198-26064197 Phaseolus vulgaris
Phvul.002G122400 5.0kb upstream 5.0kb upstream 11605 true Chr02: 26050593-26062197 Phaseolus vulgaris
Phvul.002G122400 5.0kb upstream 5.0kb upstream 5000 false Chr02: 26050593-26055592 Phaseolus vulgaris
Phvul.002G122400 5.0kb downstream 5.0kb downstream 11605 true Chr02: 26055593-26067197 Phaseolus vulgaris
Phvul.002G122400 5.0kb downstream 5.0kb downstream 5000 false Chr02: 26062198-26067197 Phaseolus vulgaris
Phvul.002G122400 10.0kb upstream 10.0kb upstream 16605 true Chr02: 26045593-26062197 Phaseolus vulgaris
Phvul.002G122400 10.0kb upstream 10.0kb upstream 10000 false Chr02: 26045593-26055592 Phaseolus vulgaris
Phvul.002G122400 10.0kb downstream 10.0kb downstream 16605 true Chr02: 26055593-26072197 Phaseolus vulgaris
Phvul.002G122400 10.0kb downstream 10.0kb downstream 10000 false Chr02: 26062198-26072197 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121779803 5273 Angiosperm View MSA
122315007 5265 Fabidae View MSA
124070995 5270 Rosid View MSA
123744219 5271 Pentapetalae View MSA
122770960 5272 Eudicot View MSA
121051442 5274 Embryophyte View MSA
123428687 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.429391 0.0 1.58377    
cufflinks 0.374988 0.0 1.40073 Low  
cufflinks 0.572323 0.0 2.05699    
cufflinks 1.25745 0.0 4.17229   High
cufflinks 0.270787 0.0 1.04551 Low  
cufflinks 0.361355 0.0 1.35254 Low  
cufflinks 0.404433 0.0 1.49935 Low  
cufflinks 0.504273 0.0 1.82907    
cufflinks 0.428892 0.0 1.58607 Low  
cufflinks 0.167026 0.0 0.665774 Low Low
cufflinks 0.750255 0.0 2.64297   High

0 Strain