Gene : Phvul.002G122800 P. vulgaris v2.1
Defline:  (1 of 3) PF03350 - Uncharacterized protein family, UPF0114 (UPF0114) Genomic Order:  1229
Name:  ? Phvul.002G122800 Secondary Identifier:  ? PAC:37175321
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G122800 0.5kb upstream 0.5kb upstream 3260 true Chr02: 26126670-26129929 Phaseolus vulgaris
Phvul.002G122800 0.5kb upstream 0.5kb upstream 500 false Chr02: 26129430-26129929 Phaseolus vulgaris
Phvul.002G122800 0.5kb downstream 0.5kb downstream 3260 true Chr02: 26126170-26129429 Phaseolus vulgaris
Phvul.002G122800 0.5kb downstream 0.5kb downstream 500 false Chr02: 26126170-26126669 Phaseolus vulgaris
Phvul.002G122800 1.0kb upstream 1.0kb upstream 3760 true Chr02: 26126670-26130429 Phaseolus vulgaris
Phvul.002G122800 1.0kb upstream 1.0kb upstream 1000 false Chr02: 26129430-26130429 Phaseolus vulgaris
Phvul.002G122800 1.0kb downstream 1.0kb downstream 3760 true Chr02: 26125670-26129429 Phaseolus vulgaris
Phvul.002G122800 1.0kb downstream 1.0kb downstream 1000 false Chr02: 26125670-26126669 Phaseolus vulgaris
Phvul.002G122800 2.0kb upstream 2.0kb upstream 4760 true Chr02: 26126670-26131429 Phaseolus vulgaris
Phvul.002G122800 2.0kb upstream 2.0kb upstream 2000 false Chr02: 26129430-26131429 Phaseolus vulgaris
Phvul.002G122800 2.0kb downstream 2.0kb downstream 4760 true Chr02: 26124670-26129429 Phaseolus vulgaris
Phvul.002G122800 2.0kb downstream 2.0kb downstream 2000 false Chr02: 26124670-26126669 Phaseolus vulgaris
Phvul.002G122800 5.0kb upstream 5.0kb upstream 7760 true Chr02: 26126670-26134429 Phaseolus vulgaris
Phvul.002G122800 5.0kb upstream 5.0kb upstream 5000 false Chr02: 26129430-26134429 Phaseolus vulgaris
Phvul.002G122800 5.0kb downstream 5.0kb downstream 7760 true Chr02: 26121670-26129429 Phaseolus vulgaris
Phvul.002G122800 5.0kb downstream 5.0kb downstream 5000 false Chr02: 26121670-26126669 Phaseolus vulgaris
Phvul.002G122800 10.0kb upstream 10.0kb upstream 12760 true Chr02: 26126670-26139429 Phaseolus vulgaris
Phvul.002G122800 10.0kb upstream 10.0kb upstream 10000 false Chr02: 26129430-26139429 Phaseolus vulgaris
Phvul.002G122800 10.0kb downstream 10.0kb downstream 12760 true Chr02: 26116670-26129429 Phaseolus vulgaris
Phvul.002G122800 10.0kb downstream 10.0kb downstream 10000 false Chr02: 26116670-26126669 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303179 5265 Fabidae View MSA
124061813 5270 Rosid View MSA
123738693 5271 Pentapetalae View MSA
122789368 5272 Eudicot View MSA
122048009 5273 Angiosperm View MSA
121348495 5274 Embryophyte View MSA
123426050 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.27941 0.0 7.64026    
cufflinks 2.90638 0.0 9.49274    
cufflinks 7.95854 0.0 23.1286   High
cufflinks 1.20776 0.0 4.34014    
cufflinks 2.00479 0.0 6.85659    
cufflinks 6.80815 0.0 20.177   High
cufflinks 0.65991 0.0 2.49922    
cufflinks 0.917166 0.0 3.3687    
cufflinks 0.171113 0.0 0.723553 Low Low
cufflinks 5.34017 0.0 16.2633    
cufflinks 2.93661 0.0 9.61422    

0 Strain