Gene : Phvul.002G244600 P. vulgaris v2.1
Defline:  (1 of 1) PTHR17204:SF18 - PRE-MRNA-PROCESSING FACTOR 39 Genomic Order:  2415
Name:  ? Phvul.002G244600 Secondary Identifier:  ? PAC:37178699
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G244600 0.5kb upstream 0.5kb upstream 17009 true Chr02: 41648071-41665079 Phaseolus vulgaris
Phvul.002G244600 0.5kb upstream 0.5kb upstream 500 false Chr02: 41648071-41648570 Phaseolus vulgaris
Phvul.002G244600 0.5kb downstream 0.5kb downstream 17009 true Chr02: 41648571-41665579 Phaseolus vulgaris
Phvul.002G244600 0.5kb downstream 0.5kb downstream 500 false Chr02: 41665080-41665579 Phaseolus vulgaris
Phvul.002G244600 1.0kb upstream 1.0kb upstream 17509 true Chr02: 41647571-41665079 Phaseolus vulgaris
Phvul.002G244600 1.0kb upstream 1.0kb upstream 1000 false Chr02: 41647571-41648570 Phaseolus vulgaris
Phvul.002G244600 1.0kb downstream 1.0kb downstream 17509 true Chr02: 41648571-41666079 Phaseolus vulgaris
Phvul.002G244600 1.0kb downstream 1.0kb downstream 1000 false Chr02: 41665080-41666079 Phaseolus vulgaris
Phvul.002G244600 2.0kb upstream 2.0kb upstream 18509 true Chr02: 41646571-41665079 Phaseolus vulgaris
Phvul.002G244600 2.0kb upstream 2.0kb upstream 2000 false Chr02: 41646571-41648570 Phaseolus vulgaris
Phvul.002G244600 2.0kb downstream 2.0kb downstream 18509 true Chr02: 41648571-41667079 Phaseolus vulgaris
Phvul.002G244600 2.0kb downstream 2.0kb downstream 2000 false Chr02: 41665080-41667079 Phaseolus vulgaris
Phvul.002G244600 5.0kb upstream 5.0kb upstream 21509 true Chr02: 41643571-41665079 Phaseolus vulgaris
Phvul.002G244600 5.0kb upstream 5.0kb upstream 5000 false Chr02: 41643571-41648570 Phaseolus vulgaris
Phvul.002G244600 5.0kb downstream 5.0kb downstream 21509 true Chr02: 41648571-41670079 Phaseolus vulgaris
Phvul.002G244600 5.0kb downstream 5.0kb downstream 5000 false Chr02: 41665080-41670079 Phaseolus vulgaris
Phvul.002G244600 10.0kb upstream 10.0kb upstream 26509 true Chr02: 41638571-41665079 Phaseolus vulgaris
Phvul.002G244600 10.0kb upstream 10.0kb upstream 10000 false Chr02: 41638571-41648570 Phaseolus vulgaris
Phvul.002G244600 10.0kb downstream 10.0kb downstream 26509 true Chr02: 41648571-41675079 Phaseolus vulgaris
Phvul.002G244600 10.0kb downstream 10.0kb downstream 10000 false Chr02: 41665080-41675079 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308744 5265 Fabidae View MSA
124069199 5270 Rosid View MSA
123753236 5271 Pentapetalae View MSA
122790404 5272 Eudicot View MSA
122048891 5273 Angiosperm View MSA
121349849 5274 Embryophyte View MSA
123426942 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.02207 0.0 3.2288   Low
cufflinks 2.47823 0.0 7.0808    
cufflinks 8.50669 0.0 22.1113   High
cufflinks 1.16345 0.0 3.64825   Low
cufflinks 4.14653 0.0 11.4057    
cufflinks 5.75325 0.0 15.2781    
cufflinks 6.16289 0.0 16.2895    
cufflinks 6.01649 0.0 15.8721    
cufflinks 4.26306 0.0 11.5876    
cufflinks 6.97908 0.0 18.3398    
cufflinks 3.01321 0.0 8.50656    

0 Strain