Gene : Phvul.002G232200 P. vulgaris v2.1
Defline:  (1 of 1) PF00046//PF02791//PF05066//PF15612//PF15614 - Homeobox domain (Homeobox) // DDT domain (DDT) // HB1, ASXL, restriction endonuclease HTH domain (HARE-HTH) // WSTF, HB1, Itc1p, MBD9 motif 1 (WHIM1) // WSTF, HB1, Itc1p, MBD9 motif 3 (WHIM3) Genomic Order:  2303
Name:  ? Phvul.002G232200 Secondary Identifier:  ? PAC:37178424
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G232200 0.5kb upstream 0.5kb upstream 10477 true Chr02: 40475296-40485772 Phaseolus vulgaris
Phvul.002G232200 0.5kb upstream 0.5kb upstream 500 false Chr02: 40485273-40485772 Phaseolus vulgaris
Phvul.002G232200 0.5kb downstream 0.5kb downstream 10477 true Chr02: 40474796-40485272 Phaseolus vulgaris
Phvul.002G232200 0.5kb downstream 0.5kb downstream 500 false Chr02: 40474796-40475295 Phaseolus vulgaris
Phvul.002G232200 1.0kb upstream 1.0kb upstream 10977 true Chr02: 40475296-40486272 Phaseolus vulgaris
Phvul.002G232200 1.0kb upstream 1.0kb upstream 1000 false Chr02: 40485273-40486272 Phaseolus vulgaris
Phvul.002G232200 1.0kb downstream 1.0kb downstream 10977 true Chr02: 40474296-40485272 Phaseolus vulgaris
Phvul.002G232200 1.0kb downstream 1.0kb downstream 1000 false Chr02: 40474296-40475295 Phaseolus vulgaris
Phvul.002G232200 2.0kb upstream 2.0kb upstream 11977 true Chr02: 40475296-40487272 Phaseolus vulgaris
Phvul.002G232200 2.0kb upstream 2.0kb upstream 2000 false Chr02: 40485273-40487272 Phaseolus vulgaris
Phvul.002G232200 2.0kb downstream 2.0kb downstream 11977 true Chr02: 40473296-40485272 Phaseolus vulgaris
Phvul.002G232200 2.0kb downstream 2.0kb downstream 2000 false Chr02: 40473296-40475295 Phaseolus vulgaris
Phvul.002G232200 5.0kb upstream 5.0kb upstream 14977 true Chr02: 40475296-40490272 Phaseolus vulgaris
Phvul.002G232200 5.0kb upstream 5.0kb upstream 5000 false Chr02: 40485273-40490272 Phaseolus vulgaris
Phvul.002G232200 5.0kb downstream 5.0kb downstream 14977 true Chr02: 40470296-40485272 Phaseolus vulgaris
Phvul.002G232200 5.0kb downstream 5.0kb downstream 5000 false Chr02: 40470296-40475295 Phaseolus vulgaris
Phvul.002G232200 10.0kb upstream 10.0kb upstream 19977 true Chr02: 40475296-40495272 Phaseolus vulgaris
Phvul.002G232200 10.0kb upstream 10.0kb upstream 10000 false Chr02: 40485273-40495272 Phaseolus vulgaris
Phvul.002G232200 10.0kb downstream 10.0kb downstream 19977 true Chr02: 40465296-40485272 Phaseolus vulgaris
Phvul.002G232200 10.0kb downstream 10.0kb downstream 10000 false Chr02: 40465296-40475295 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297221 5265 Fabidae View MSA
124069157 5270 Rosid View MSA
123743717 5271 Pentapetalae View MSA
122786620 5272 Eudicot View MSA
122044576 5273 Angiosperm View MSA
121345296 5274 Embryophyte View MSA
123427491 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.53386 0.0 8.76717   Low
cufflinks 6.06539 0.0 19.2913    
cufflinks 11.7826 0.0 34.4342    
cufflinks 3.002 0.0 9.27399   Low
cufflinks 8.70009 0.0 28.364    
cufflinks 12.5548 0.0 42.0181    
cufflinks 12.0467 0.0 40.1353    
cufflinks 12.7051 0.0 43.0475    
cufflinks 11.0038 0.0 36.1707    
cufflinks 20.7976 0.0 65.9978   High
cufflinks 5.77498 0.0 18.8269    

0 Strain