Gene : Phvul.002G228600 P. vulgaris v2.1
Defline:  (1 of 2) PTHR12313//PTHR12313:SF6 - RNF5 // SUBFAMILY NOT NAMED Genomic Order:  2260
Name:  ? Phvul.002G228600 Secondary Identifier:  ? PAC:37175181
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7511 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G228600 0.5kb upstream 0.5kb upstream 2836 true Chr02: 40005632-40008467 Phaseolus vulgaris
Phvul.002G228600 0.5kb upstream 0.5kb upstream 500 false Chr02: 40007968-40008467 Phaseolus vulgaris
Phvul.002G228600 0.5kb downstream 0.5kb downstream 2836 true Chr02: 40005132-40007967 Phaseolus vulgaris
Phvul.002G228600 0.5kb downstream 0.5kb downstream 500 false Chr02: 40005132-40005631 Phaseolus vulgaris
Phvul.002G228600 1.0kb upstream 1.0kb upstream 3336 true Chr02: 40005632-40008967 Phaseolus vulgaris
Phvul.002G228600 1.0kb upstream 1.0kb upstream 1000 false Chr02: 40007968-40008967 Phaseolus vulgaris
Phvul.002G228600 1.0kb downstream 1.0kb downstream 3336 true Chr02: 40004632-40007967 Phaseolus vulgaris
Phvul.002G228600 1.0kb downstream 1.0kb downstream 1000 false Chr02: 40004632-40005631 Phaseolus vulgaris
Phvul.002G228600 2.0kb upstream 2.0kb upstream 4336 true Chr02: 40005632-40009967 Phaseolus vulgaris
Phvul.002G228600 2.0kb upstream 2.0kb upstream 2000 false Chr02: 40007968-40009967 Phaseolus vulgaris
Phvul.002G228600 2.0kb downstream 2.0kb downstream 4336 true Chr02: 40003632-40007967 Phaseolus vulgaris
Phvul.002G228600 2.0kb downstream 2.0kb downstream 2000 false Chr02: 40003632-40005631 Phaseolus vulgaris
Phvul.002G228600 5.0kb upstream 5.0kb upstream 7336 true Chr02: 40005632-40012967 Phaseolus vulgaris
Phvul.002G228600 5.0kb upstream 5.0kb upstream 5000 false Chr02: 40007968-40012967 Phaseolus vulgaris
Phvul.002G228600 5.0kb downstream 5.0kb downstream 7336 true Chr02: 40000632-40007967 Phaseolus vulgaris
Phvul.002G228600 5.0kb downstream 5.0kb downstream 5000 false Chr02: 40000632-40005631 Phaseolus vulgaris
Phvul.002G228600 10.0kb upstream 10.0kb upstream 12336 true Chr02: 40005632-40017967 Phaseolus vulgaris
Phvul.002G228600 10.0kb upstream 10.0kb upstream 10000 false Chr02: 40007968-40017967 Phaseolus vulgaris
Phvul.002G228600 10.0kb downstream 10.0kb downstream 12336 true Chr02: 39995632-40007967 Phaseolus vulgaris
Phvul.002G228600 10.0kb downstream 10.0kb downstream 10000 false Chr02: 39995632-40005631 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309912 5265 Fabidae View MSA
124070721 5270 Rosid View MSA
123750753 5271 Pentapetalae View MSA
122796389 5272 Eudicot View MSA
122051949 5273 Angiosperm View MSA
121312825 5274 Embryophyte View MSA
123428794 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.85062 0.0 17.6956   Low
cufflinks 11.8976 0.0 33.3294    
cufflinks 19.1182 0.0 51.3192   High
cufflinks 17.5881 0.0 47.6057    
cufflinks 22.4101 0.0 59.5725   High
cufflinks 14.6555 0.0 40.2833    
cufflinks 5.88821 0.0 17.7298    
cufflinks 4.69616 0.0 14.4915   Low
cufflinks 8.74155 0.0 25.2165    
cufflinks 5.3008 0.0 16.214   Low
cufflinks 17.1722 0.0 46.661    

0 Strain