Gene : Phvul.002G227900 P. vulgaris v2.1
Defline:  (1 of 1) K03144 - transcription initiation factor TFIIH subunit 4 (TFIIH4, GTF2H4, TFB2) Genomic Order:  2253
Name:  ? Phvul.002G227900 Secondary Identifier:  ? PAC:37176840
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G227900 0.5kb upstream 0.5kb upstream 5952 true Chr02: 39955111-39961062 Phaseolus vulgaris
Phvul.002G227900 0.5kb upstream 0.5kb upstream 500 false Chr02: 39955111-39955610 Phaseolus vulgaris
Phvul.002G227900 0.5kb downstream 0.5kb downstream 5952 true Chr02: 39955611-39961562 Phaseolus vulgaris
Phvul.002G227900 0.5kb downstream 0.5kb downstream 500 false Chr02: 39961063-39961562 Phaseolus vulgaris
Phvul.002G227900 1.0kb upstream 1.0kb upstream 6452 true Chr02: 39954611-39961062 Phaseolus vulgaris
Phvul.002G227900 1.0kb upstream 1.0kb upstream 1000 false Chr02: 39954611-39955610 Phaseolus vulgaris
Phvul.002G227900 1.0kb downstream 1.0kb downstream 6452 true Chr02: 39955611-39962062 Phaseolus vulgaris
Phvul.002G227900 1.0kb downstream 1.0kb downstream 1000 false Chr02: 39961063-39962062 Phaseolus vulgaris
Phvul.002G227900 2.0kb upstream 2.0kb upstream 7452 true Chr02: 39953611-39961062 Phaseolus vulgaris
Phvul.002G227900 2.0kb upstream 2.0kb upstream 2000 false Chr02: 39953611-39955610 Phaseolus vulgaris
Phvul.002G227900 2.0kb downstream 2.0kb downstream 7452 true Chr02: 39955611-39963062 Phaseolus vulgaris
Phvul.002G227900 2.0kb downstream 2.0kb downstream 2000 false Chr02: 39961063-39963062 Phaseolus vulgaris
Phvul.002G227900 5.0kb upstream 5.0kb upstream 10452 true Chr02: 39950611-39961062 Phaseolus vulgaris
Phvul.002G227900 5.0kb upstream 5.0kb upstream 5000 false Chr02: 39950611-39955610 Phaseolus vulgaris
Phvul.002G227900 5.0kb downstream 5.0kb downstream 10452 true Chr02: 39955611-39966062 Phaseolus vulgaris
Phvul.002G227900 5.0kb downstream 5.0kb downstream 5000 false Chr02: 39961063-39966062 Phaseolus vulgaris
Phvul.002G227900 10.0kb upstream 10.0kb upstream 15452 true Chr02: 39945611-39961062 Phaseolus vulgaris
Phvul.002G227900 10.0kb upstream 10.0kb upstream 10000 false Chr02: 39945611-39955610 Phaseolus vulgaris
Phvul.002G227900 10.0kb downstream 10.0kb downstream 15452 true Chr02: 39955611-39971062 Phaseolus vulgaris
Phvul.002G227900 10.0kb downstream 10.0kb downstream 10000 false Chr02: 39961063-39971062 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303839 5265 Fabidae View MSA
124050287 5270 Rosid View MSA
123747685 5271 Pentapetalae View MSA
122797891 5272 Eudicot View MSA
122042198 5273 Angiosperm View MSA
121346770 5274 Embryophyte View MSA
123427579 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.19377 0.0 18.0839    
cufflinks 4.69638 0.0 20.1615    
cufflinks 4.89164 0.0 16.86    
cufflinks 5.39463 0.0 18.6019    
cufflinks 4.11083 0.0 15.0398    
cufflinks 3.88527 0.0 15.1413   Low
cufflinks 5.33332 0.0 22.3337    
cufflinks 7.16057 0.0 27.1575   High
cufflinks 4.81449 0.0 17.561    
cufflinks 5.16672 0.0 21.3286    
cufflinks 3.67123 0.0 13.8094   Low

0 Strain