Gene : Phvul.002G216800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11540:SF21 - MALATE DEHYDROGENASE, GLYOXYSOMAL Genomic Order:  2147
Name:  ? Phvul.002G216800 Secondary Identifier:  ? PAC:37178819
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris GLUCONEO-PWY Phaseolus vulgaris pathologic  
Pvulgaris GLYOXYLATE-BYPASS Phaseolus vulgaris pathologic  
Pvulgaris PWY-5464 Phaseolus vulgaris pathologic  
Pvulgaris PWY-561 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5690 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7115 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G216800 0.5kb upstream 0.5kb upstream 4174 true Chr02: 38602208-38606381 Phaseolus vulgaris
Phvul.002G216800 0.5kb upstream 0.5kb upstream 500 false Chr02: 38605882-38606381 Phaseolus vulgaris
Phvul.002G216800 0.5kb downstream 0.5kb downstream 4174 true Chr02: 38601708-38605881 Phaseolus vulgaris
Phvul.002G216800 0.5kb downstream 0.5kb downstream 500 false Chr02: 38601708-38602207 Phaseolus vulgaris
Phvul.002G216800 1.0kb upstream 1.0kb upstream 4674 true Chr02: 38602208-38606881 Phaseolus vulgaris
Phvul.002G216800 1.0kb upstream 1.0kb upstream 1000 false Chr02: 38605882-38606881 Phaseolus vulgaris
Phvul.002G216800 1.0kb downstream 1.0kb downstream 4674 true Chr02: 38601208-38605881 Phaseolus vulgaris
Phvul.002G216800 1.0kb downstream 1.0kb downstream 1000 false Chr02: 38601208-38602207 Phaseolus vulgaris
Phvul.002G216800 2.0kb upstream 2.0kb upstream 5674 true Chr02: 38602208-38607881 Phaseolus vulgaris
Phvul.002G216800 2.0kb upstream 2.0kb upstream 2000 false Chr02: 38605882-38607881 Phaseolus vulgaris
Phvul.002G216800 2.0kb downstream 2.0kb downstream 5674 true Chr02: 38600208-38605881 Phaseolus vulgaris
Phvul.002G216800 2.0kb downstream 2.0kb downstream 2000 false Chr02: 38600208-38602207 Phaseolus vulgaris
Phvul.002G216800 5.0kb upstream 5.0kb upstream 8674 true Chr02: 38602208-38610881 Phaseolus vulgaris
Phvul.002G216800 5.0kb upstream 5.0kb upstream 5000 false Chr02: 38605882-38610881 Phaseolus vulgaris
Phvul.002G216800 5.0kb downstream 5.0kb downstream 8674 true Chr02: 38597208-38605881 Phaseolus vulgaris
Phvul.002G216800 5.0kb downstream 5.0kb downstream 5000 false Chr02: 38597208-38602207 Phaseolus vulgaris
Phvul.002G216800 10.0kb upstream 10.0kb upstream 13674 true Chr02: 38602208-38615881 Phaseolus vulgaris
Phvul.002G216800 10.0kb upstream 10.0kb upstream 10000 false Chr02: 38605882-38615881 Phaseolus vulgaris
Phvul.002G216800 10.0kb downstream 10.0kb downstream 13674 true Chr02: 38592208-38605881 Phaseolus vulgaris
Phvul.002G216800 10.0kb downstream 10.0kb downstream 10000 false Chr02: 38592208-38602207 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313107 5265 Fabidae View MSA
124072228 5270 Rosid View MSA
123748567 5271 Pentapetalae View MSA
122789839 5272 Eudicot View MSA
122041534 5273 Angiosperm View MSA
121344614 5274 Embryophyte View MSA
123426123 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 80.2799 0.0 294.158 High  
cufflinks 48.0223 0.0 158.608 High  
cufflinks 324.718 0.0 1638.78 High High
cufflinks 60.7744 0.0 205.712 High  
cufflinks 42.4565 0.0 138.079 High  
cufflinks 122.193 0.0 495.589 High High
cufflinks 27.4281 0.0 87.2226    
cufflinks 24.3831 0.0 77.7238   Low
cufflinks 29.6424 0.0 94.4037    
cufflinks 62.9988 0.0 217.148 High  
cufflinks 44.0722 0.0 143.882 High  

0 Strain