Gene : Phvul.002G219900 P. vulgaris v2.1
Defline:  (1 of 9) PF00954//PF01453//PF07714//PF08276//PF11883 - S-locus glycoprotein domain (S_locus_glycop) // D-mannose binding lectin (B_lectin) // Protein tyrosine kinase (Pkinase_Tyr) // PAN-like domain (PAN_2) // Domain of unknown function (DUF3403) (DUF3403) Genomic Order:  2177
Name:  ? Phvul.002G219900 Secondary Identifier:  ? PAC:37177048
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G219900 0.5kb upstream 0.5kb upstream 6674 true Chr02: 39020682-39027355 Phaseolus vulgaris
Phvul.002G219900 0.5kb upstream 0.5kb upstream 500 false Chr02: 39020682-39021181 Phaseolus vulgaris
Phvul.002G219900 0.5kb downstream 0.5kb downstream 6674 true Chr02: 39021182-39027855 Phaseolus vulgaris
Phvul.002G219900 0.5kb downstream 0.5kb downstream 500 false Chr02: 39027356-39027855 Phaseolus vulgaris
Phvul.002G219900 1.0kb upstream 1.0kb upstream 7174 true Chr02: 39020182-39027355 Phaseolus vulgaris
Phvul.002G219900 1.0kb upstream 1.0kb upstream 1000 false Chr02: 39020182-39021181 Phaseolus vulgaris
Phvul.002G219900 1.0kb downstream 1.0kb downstream 7174 true Chr02: 39021182-39028355 Phaseolus vulgaris
Phvul.002G219900 1.0kb downstream 1.0kb downstream 1000 false Chr02: 39027356-39028355 Phaseolus vulgaris
Phvul.002G219900 2.0kb upstream 2.0kb upstream 8174 true Chr02: 39019182-39027355 Phaseolus vulgaris
Phvul.002G219900 2.0kb upstream 2.0kb upstream 2000 false Chr02: 39019182-39021181 Phaseolus vulgaris
Phvul.002G219900 2.0kb downstream 2.0kb downstream 8174 true Chr02: 39021182-39029355 Phaseolus vulgaris
Phvul.002G219900 2.0kb downstream 2.0kb downstream 2000 false Chr02: 39027356-39029355 Phaseolus vulgaris
Phvul.002G219900 5.0kb upstream 5.0kb upstream 11174 true Chr02: 39016182-39027355 Phaseolus vulgaris
Phvul.002G219900 5.0kb upstream 5.0kb upstream 5000 false Chr02: 39016182-39021181 Phaseolus vulgaris
Phvul.002G219900 5.0kb downstream 5.0kb downstream 11174 true Chr02: 39021182-39032355 Phaseolus vulgaris
Phvul.002G219900 5.0kb downstream 5.0kb downstream 5000 false Chr02: 39027356-39032355 Phaseolus vulgaris
Phvul.002G219900 10.0kb upstream 10.0kb upstream 16174 true Chr02: 39011182-39027355 Phaseolus vulgaris
Phvul.002G219900 10.0kb upstream 10.0kb upstream 10000 false Chr02: 39011182-39021181 Phaseolus vulgaris
Phvul.002G219900 10.0kb downstream 10.0kb downstream 16174 true Chr02: 39021182-39037355 Phaseolus vulgaris
Phvul.002G219900 10.0kb downstream 10.0kb downstream 10000 false Chr02: 39027356-39037355 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304326 5265 Fabidae View MSA
124074937 5270 Rosid View MSA
123753765 5271 Pentapetalae View MSA
122797900 5272 Eudicot View MSA
122051692 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.9065 0.0 25.6758    
cufflinks 6.07487 0.0 16.116    
cufflinks 13.7106 0.0 35.4405    
cufflinks 8.6563 0.0 22.5835    
cufflinks 2.96226 0.0 8.36545    
cufflinks 11.9472 0.0 30.8887    
cufflinks 0.178611 0.0 0.673307 Low Low
cufflinks 0.628904 0.0 2.09929    
cufflinks 0.0646664 0.0 0.26423 Low Low
cufflinks 5.87744 0.0 15.6316    
cufflinks 5.6949 0.0 15.1734    

0 Strain