Gene : Phvul.002G218500 P. vulgaris v2.1
Defline:  (1 of 1) PTHR28052:SF1 - UPF0545 PROTEIN C22ORF39 Genomic Order:  2163
Name:  ? Phvul.002G218500 Secondary Identifier:  ? PAC:37176062
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G218500 0.5kb upstream 0.5kb upstream 3408 true Chr02: 38779496-38782903 Phaseolus vulgaris
Phvul.002G218500 0.5kb upstream 0.5kb upstream 500 false Chr02: 38779496-38779995 Phaseolus vulgaris
Phvul.002G218500 0.5kb downstream 0.5kb downstream 3408 true Chr02: 38779996-38783403 Phaseolus vulgaris
Phvul.002G218500 0.5kb downstream 0.5kb downstream 500 false Chr02: 38782904-38783403 Phaseolus vulgaris
Phvul.002G218500 1.0kb upstream 1.0kb upstream 3908 true Chr02: 38778996-38782903 Phaseolus vulgaris
Phvul.002G218500 1.0kb upstream 1.0kb upstream 1000 false Chr02: 38778996-38779995 Phaseolus vulgaris
Phvul.002G218500 1.0kb downstream 1.0kb downstream 3908 true Chr02: 38779996-38783903 Phaseolus vulgaris
Phvul.002G218500 1.0kb downstream 1.0kb downstream 1000 false Chr02: 38782904-38783903 Phaseolus vulgaris
Phvul.002G218500 2.0kb upstream 2.0kb upstream 4908 true Chr02: 38777996-38782903 Phaseolus vulgaris
Phvul.002G218500 2.0kb upstream 2.0kb upstream 2000 false Chr02: 38777996-38779995 Phaseolus vulgaris
Phvul.002G218500 2.0kb downstream 2.0kb downstream 4908 true Chr02: 38779996-38784903 Phaseolus vulgaris
Phvul.002G218500 2.0kb downstream 2.0kb downstream 2000 false Chr02: 38782904-38784903 Phaseolus vulgaris
Phvul.002G218500 5.0kb upstream 5.0kb upstream 7908 true Chr02: 38774996-38782903 Phaseolus vulgaris
Phvul.002G218500 5.0kb upstream 5.0kb upstream 5000 false Chr02: 38774996-38779995 Phaseolus vulgaris
Phvul.002G218500 5.0kb downstream 5.0kb downstream 7908 true Chr02: 38779996-38787903 Phaseolus vulgaris
Phvul.002G218500 5.0kb downstream 5.0kb downstream 5000 false Chr02: 38782904-38787903 Phaseolus vulgaris
Phvul.002G218500 10.0kb upstream 10.0kb upstream 12908 true Chr02: 38769996-38782903 Phaseolus vulgaris
Phvul.002G218500 10.0kb upstream 10.0kb upstream 10000 false Chr02: 38769996-38779995 Phaseolus vulgaris
Phvul.002G218500 10.0kb downstream 10.0kb downstream 12908 true Chr02: 38779996-38792903 Phaseolus vulgaris
Phvul.002G218500 10.0kb downstream 10.0kb downstream 10000 false Chr02: 38782904-38792903 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299583 5265 Fabidae View MSA
124067499 5270 Rosid View MSA
123746136 5271 Pentapetalae View MSA
122790093 5272 Eudicot View MSA
122047882 5273 Angiosperm View MSA
121343967 5274 Embryophyte View MSA
123425812 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.69837 0.0 24.7353    
cufflinks 6.1689 0.0 20.2812    
cufflinks 8.8386 0.0 27.8801    
cufflinks 16.2408 0.0 47.7173   High
cufflinks 8.62555 0.0 27.4541    
cufflinks 3.91906 0.0 13.5703   Low
cufflinks 7.06187 0.0 22.8149    
cufflinks 11.2321 0.0 34.3833    
cufflinks 8.61147 0.0 27.2394    
cufflinks 6.14071 0.0 20.2646    
cufflinks 8.56602 0.0 27.2511    

0 Strain