Gene : Phvul.002G222800 P. vulgaris v2.1
Defline:  (1 of 2) K04718 - sphingosine kinase (SPHK) Genomic Order:  2209
Name:  ? Phvul.002G222800 Secondary Identifier:  ? PAC:37175093
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5129 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6483 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G222800 0.5kb upstream 0.5kb upstream 4688 true Chr02: 39416302-39420989 Phaseolus vulgaris
Phvul.002G222800 0.5kb upstream 0.5kb upstream 500 false Chr02: 39416302-39416801 Phaseolus vulgaris
Phvul.002G222800 0.5kb downstream 0.5kb downstream 4688 true Chr02: 39416802-39421489 Phaseolus vulgaris
Phvul.002G222800 0.5kb downstream 0.5kb downstream 500 false Chr02: 39420990-39421489 Phaseolus vulgaris
Phvul.002G222800 1.0kb upstream 1.0kb upstream 5188 true Chr02: 39415802-39420989 Phaseolus vulgaris
Phvul.002G222800 1.0kb upstream 1.0kb upstream 1000 false Chr02: 39415802-39416801 Phaseolus vulgaris
Phvul.002G222800 1.0kb downstream 1.0kb downstream 5188 true Chr02: 39416802-39421989 Phaseolus vulgaris
Phvul.002G222800 1.0kb downstream 1.0kb downstream 1000 false Chr02: 39420990-39421989 Phaseolus vulgaris
Phvul.002G222800 2.0kb upstream 2.0kb upstream 6188 true Chr02: 39414802-39420989 Phaseolus vulgaris
Phvul.002G222800 2.0kb upstream 2.0kb upstream 2000 false Chr02: 39414802-39416801 Phaseolus vulgaris
Phvul.002G222800 2.0kb downstream 2.0kb downstream 6188 true Chr02: 39416802-39422989 Phaseolus vulgaris
Phvul.002G222800 2.0kb downstream 2.0kb downstream 2000 false Chr02: 39420990-39422989 Phaseolus vulgaris
Phvul.002G222800 5.0kb upstream 5.0kb upstream 9188 true Chr02: 39411802-39420989 Phaseolus vulgaris
Phvul.002G222800 5.0kb upstream 5.0kb upstream 5000 false Chr02: 39411802-39416801 Phaseolus vulgaris
Phvul.002G222800 5.0kb downstream 5.0kb downstream 9188 true Chr02: 39416802-39425989 Phaseolus vulgaris
Phvul.002G222800 5.0kb downstream 5.0kb downstream 5000 false Chr02: 39420990-39425989 Phaseolus vulgaris
Phvul.002G222800 10.0kb upstream 10.0kb upstream 14188 true Chr02: 39406802-39420989 Phaseolus vulgaris
Phvul.002G222800 10.0kb upstream 10.0kb upstream 10000 false Chr02: 39406802-39416801 Phaseolus vulgaris
Phvul.002G222800 10.0kb downstream 10.0kb downstream 14188 true Chr02: 39416802-39430989 Phaseolus vulgaris
Phvul.002G222800 10.0kb downstream 10.0kb downstream 10000 false Chr02: 39420990-39430989 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314274 5265 Fabidae View MSA
124066639 5270 Rosid View MSA
123737091 5271 Pentapetalae View MSA
122793625 5272 Eudicot View MSA
122045440 5273 Angiosperm View MSA
121350923 5274 Embryophyte View MSA
123428396 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.0281 0.0 29.0592    
cufflinks 2.61289 0.0 7.88157    
cufflinks 0.26799 0.0 1.02202 Low Low
cufflinks 2.05844 0.0 6.4547    
cufflinks 3.5825 0.0 10.4784    
cufflinks 0.275499 0.0 1.04761 Low Low
cufflinks 8.30159 0.0 22.3022    
cufflinks 4.86907 0.0 13.6779    
cufflinks 11.0281 0.0 29.1072    
cufflinks 11.1069 0.0 29.2839    
cufflinks 2.57444 0.0 7.806    

0 Strain