Gene : Phvul.002G188800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR33734:SF5 - LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 Genomic Order:  1867
Name:  ? Phvul.002G188800 Secondary Identifier:  ? PAC:37177071
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G188800 0.5kb upstream 0.5kb upstream 3930 true Chr02: 35149326-35153255 Phaseolus vulgaris
Phvul.002G188800 0.5kb upstream 0.5kb upstream 500 false Chr02: 35152756-35153255 Phaseolus vulgaris
Phvul.002G188800 0.5kb downstream 0.5kb downstream 3930 true Chr02: 35148826-35152755 Phaseolus vulgaris
Phvul.002G188800 0.5kb downstream 0.5kb downstream 500 false Chr02: 35148826-35149325 Phaseolus vulgaris
Phvul.002G188800 1.0kb upstream 1.0kb upstream 4430 true Chr02: 35149326-35153755 Phaseolus vulgaris
Phvul.002G188800 1.0kb upstream 1.0kb upstream 1000 false Chr02: 35152756-35153755 Phaseolus vulgaris
Phvul.002G188800 1.0kb downstream 1.0kb downstream 4430 true Chr02: 35148326-35152755 Phaseolus vulgaris
Phvul.002G188800 1.0kb downstream 1.0kb downstream 1000 false Chr02: 35148326-35149325 Phaseolus vulgaris
Phvul.002G188800 2.0kb upstream 2.0kb upstream 5430 true Chr02: 35149326-35154755 Phaseolus vulgaris
Phvul.002G188800 2.0kb upstream 2.0kb upstream 2000 false Chr02: 35152756-35154755 Phaseolus vulgaris
Phvul.002G188800 2.0kb downstream 2.0kb downstream 5430 true Chr02: 35147326-35152755 Phaseolus vulgaris
Phvul.002G188800 2.0kb downstream 2.0kb downstream 2000 false Chr02: 35147326-35149325 Phaseolus vulgaris
Phvul.002G188800 5.0kb upstream 5.0kb upstream 8430 true Chr02: 35149326-35157755 Phaseolus vulgaris
Phvul.002G188800 5.0kb upstream 5.0kb upstream 5000 false Chr02: 35152756-35157755 Phaseolus vulgaris
Phvul.002G188800 5.0kb downstream 5.0kb downstream 8430 true Chr02: 35144326-35152755 Phaseolus vulgaris
Phvul.002G188800 5.0kb downstream 5.0kb downstream 5000 false Chr02: 35144326-35149325 Phaseolus vulgaris
Phvul.002G188800 10.0kb upstream 10.0kb upstream 13430 true Chr02: 35149326-35162755 Phaseolus vulgaris
Phvul.002G188800 10.0kb upstream 10.0kb upstream 10000 false Chr02: 35152756-35162755 Phaseolus vulgaris
Phvul.002G188800 10.0kb downstream 10.0kb downstream 13430 true Chr02: 35139326-35152755 Phaseolus vulgaris
Phvul.002G188800 10.0kb downstream 10.0kb downstream 10000 false Chr02: 35139326-35149325 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041196 5273 Angiosperm View MSA
122305015 5265 Fabidae View MSA
124066383 5270 Rosid View MSA
123740270 5271 Pentapetalae View MSA
122790310 5272 Eudicot View MSA
121350262 5274 Embryophyte View MSA
123381651 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 85.2635 0.0 234.474 High High
cufflinks 48.3483 0.0 127.103 High  
cufflinks 12.533 0.0 33.389   Low
cufflinks 36.144 0.0 93.9824 High  
cufflinks 49.6102 0.0 130.788 High  
cufflinks 26.1501 0.0 67.5932    
cufflinks 32.6596 0.0 84.7506 High  
cufflinks 22.1642 0.0 57.3464    
cufflinks 44.3734 0.0 116.627 High  
cufflinks 51.216 0.0 135.089 High  
cufflinks 36.3625 0.0 94.5146 High  

0 Strain