Gene : Phvul.002G190000 P. vulgaris v2.1
Defline:  (1 of 6) K17686 - Cu+-exporting ATPase (copA, ATP7) Genomic Order:  1879
Name:  ? Phvul.002G190000 Secondary Identifier:  ? PAC:37174958
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G190000 0.5kb upstream 0.5kb upstream 6435 true Chr02: 35343683-35350117 Phaseolus vulgaris
Phvul.002G190000 0.5kb upstream 0.5kb upstream 500 false Chr02: 35349618-35350117 Phaseolus vulgaris
Phvul.002G190000 0.5kb downstream 0.5kb downstream 6435 true Chr02: 35343183-35349617 Phaseolus vulgaris
Phvul.002G190000 0.5kb downstream 0.5kb downstream 500 false Chr02: 35343183-35343682 Phaseolus vulgaris
Phvul.002G190000 1.0kb upstream 1.0kb upstream 6935 true Chr02: 35343683-35350617 Phaseolus vulgaris
Phvul.002G190000 1.0kb upstream 1.0kb upstream 1000 false Chr02: 35349618-35350617 Phaseolus vulgaris
Phvul.002G190000 1.0kb downstream 1.0kb downstream 6935 true Chr02: 35342683-35349617 Phaseolus vulgaris
Phvul.002G190000 1.0kb downstream 1.0kb downstream 1000 false Chr02: 35342683-35343682 Phaseolus vulgaris
Phvul.002G190000 2.0kb upstream 2.0kb upstream 7935 true Chr02: 35343683-35351617 Phaseolus vulgaris
Phvul.002G190000 2.0kb upstream 2.0kb upstream 2000 false Chr02: 35349618-35351617 Phaseolus vulgaris
Phvul.002G190000 2.0kb downstream 2.0kb downstream 7935 true Chr02: 35341683-35349617 Phaseolus vulgaris
Phvul.002G190000 2.0kb downstream 2.0kb downstream 2000 false Chr02: 35341683-35343682 Phaseolus vulgaris
Phvul.002G190000 5.0kb upstream 5.0kb upstream 10935 true Chr02: 35343683-35354617 Phaseolus vulgaris
Phvul.002G190000 5.0kb upstream 5.0kb upstream 5000 false Chr02: 35349618-35354617 Phaseolus vulgaris
Phvul.002G190000 5.0kb downstream 5.0kb downstream 10935 true Chr02: 35338683-35349617 Phaseolus vulgaris
Phvul.002G190000 5.0kb downstream 5.0kb downstream 5000 false Chr02: 35338683-35343682 Phaseolus vulgaris
Phvul.002G190000 10.0kb upstream 10.0kb upstream 15935 true Chr02: 35343683-35359617 Phaseolus vulgaris
Phvul.002G190000 10.0kb upstream 10.0kb upstream 10000 false Chr02: 35349618-35359617 Phaseolus vulgaris
Phvul.002G190000 10.0kb downstream 10.0kb downstream 15935 true Chr02: 35333683-35349617 Phaseolus vulgaris
Phvul.002G190000 10.0kb downstream 10.0kb downstream 10000 false Chr02: 35333683-35343682 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311207 5265 Fabidae View MSA
124069200 5270 Rosid View MSA
123737302 5271 Pentapetalae View MSA
122788336 5272 Eudicot View MSA
122045942 5273 Angiosperm View MSA
121346195 5274 Embryophyte View MSA
123426796 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.8373 0.0 17.8681    
cufflinks 3.30588 0.0 9.12384   Low
cufflinks 2.48187 0.0 7.04234   Low
cufflinks 4.09099 0.0 11.1516    
cufflinks 19.5931 0.0 51.2619    
cufflinks 3.06791 0.0 8.52882   Low
cufflinks 17.1268 0.0 44.6265    
cufflinks 8.91369 0.0 23.0912    
cufflinks 29.2697 0.0 78.7366   High
cufflinks 18.7122 0.0 48.9341    
cufflinks 25.1434 0.0 66.8967   High

0 Strain