Gene : Phvul.002G305800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR22594:SF34 - ASPARAGINE--TRNA LIGASE, MITOCHONDRIAL-RELATED Genomic Order:  3047
Name:  ? Phvul.002G305800 Secondary Identifier:  ? PAC:37175546
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris TRNA-CHARGING-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G305800 0.5kb upstream 0.5kb upstream 3430 true Chr02: 47374928-47378357 Phaseolus vulgaris
Phvul.002G305800 0.5kb upstream 0.5kb upstream 500 false Chr02: 47377858-47378357 Phaseolus vulgaris
Phvul.002G305800 0.5kb downstream 0.5kb downstream 3430 true Chr02: 47374428-47377857 Phaseolus vulgaris
Phvul.002G305800 0.5kb downstream 0.5kb downstream 500 false Chr02: 47374428-47374927 Phaseolus vulgaris
Phvul.002G305800 1.0kb upstream 1.0kb upstream 3930 true Chr02: 47374928-47378857 Phaseolus vulgaris
Phvul.002G305800 1.0kb upstream 1.0kb upstream 1000 false Chr02: 47377858-47378857 Phaseolus vulgaris
Phvul.002G305800 1.0kb downstream 1.0kb downstream 3930 true Chr02: 47373928-47377857 Phaseolus vulgaris
Phvul.002G305800 1.0kb downstream 1.0kb downstream 1000 false Chr02: 47373928-47374927 Phaseolus vulgaris
Phvul.002G305800 2.0kb upstream 2.0kb upstream 4930 true Chr02: 47374928-47379857 Phaseolus vulgaris
Phvul.002G305800 2.0kb upstream 2.0kb upstream 2000 false Chr02: 47377858-47379857 Phaseolus vulgaris
Phvul.002G305800 2.0kb downstream 2.0kb downstream 4930 true Chr02: 47372928-47377857 Phaseolus vulgaris
Phvul.002G305800 2.0kb downstream 2.0kb downstream 2000 false Chr02: 47372928-47374927 Phaseolus vulgaris
Phvul.002G305800 5.0kb upstream 5.0kb upstream 7930 true Chr02: 47374928-47382857 Phaseolus vulgaris
Phvul.002G305800 5.0kb upstream 5.0kb upstream 5000 false Chr02: 47377858-47382857 Phaseolus vulgaris
Phvul.002G305800 5.0kb downstream 5.0kb downstream 7930 true Chr02: 47369928-47377857 Phaseolus vulgaris
Phvul.002G305800 5.0kb downstream 5.0kb downstream 5000 false Chr02: 47369928-47374927 Phaseolus vulgaris
Phvul.002G305800 10.0kb upstream 10.0kb upstream 12930 true Chr02: 47374928-47387857 Phaseolus vulgaris
Phvul.002G305800 10.0kb upstream 10.0kb upstream 10000 false Chr02: 47377858-47387857 Phaseolus vulgaris
Phvul.002G305800 10.0kb downstream 10.0kb downstream 12930 true Chr02: 47364928-47377857 Phaseolus vulgaris
Phvul.002G305800 10.0kb downstream 10.0kb downstream 10000 false Chr02: 47364928-47374927 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307206 5265 Fabidae View MSA
124074798 5270 Rosid View MSA
123738885 5271 Pentapetalae View MSA
122790023 5272 Eudicot View MSA
122045893 5273 Angiosperm View MSA
121347200 5274 Embryophyte View MSA
123425101 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 43.5631 0.0 116.276 High Low
cufflinks 72.8699 0.0 204.12 High High
cufflinks 45.7863 0.0 122.57 High Low
cufflinks 60.4008 0.0 165.404 High  
cufflinks 55.2208 0.0 150.329 High  
cufflinks 46.191 0.0 123.863 High Low
cufflinks 49.0475 0.0 132.544 High  
cufflinks 57.44 0.0 157.394 High  
cufflinks 57.2621 0.0 156.499 High  
cufflinks 71.0446 0.0 198.465 High High
cufflinks 63.3801 0.0 175.157 High  

0 Strain