Gene : Phvul.002G287700 P. vulgaris v2.1
Defline:  (1 of 1) KOG0963//KOG0978//KOG4593 - Transcription factor/CCAAT displacement protein CDP1 // E3 ubiquitin ligase involved in syntaxin degradation // Mitotic checkpoint protein MAD1 Genomic Order:  2861
Name:  ? Phvul.002G287700 Secondary Identifier:  ? PAC:37177846
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G287700 0.5kb upstream 0.5kb upstream 5890 true Chr02: 45686279-45692168 Phaseolus vulgaris
Phvul.002G287700 0.5kb upstream 0.5kb upstream 500 false Chr02: 45686279-45686778 Phaseolus vulgaris
Phvul.002G287700 0.5kb downstream 0.5kb downstream 5890 true Chr02: 45686779-45692668 Phaseolus vulgaris
Phvul.002G287700 0.5kb downstream 0.5kb downstream 500 false Chr02: 45692169-45692668 Phaseolus vulgaris
Phvul.002G287700 1.0kb upstream 1.0kb upstream 6390 true Chr02: 45685779-45692168 Phaseolus vulgaris
Phvul.002G287700 1.0kb upstream 1.0kb upstream 1000 false Chr02: 45685779-45686778 Phaseolus vulgaris
Phvul.002G287700 1.0kb downstream 1.0kb downstream 6390 true Chr02: 45686779-45693168 Phaseolus vulgaris
Phvul.002G287700 1.0kb downstream 1.0kb downstream 1000 false Chr02: 45692169-45693168 Phaseolus vulgaris
Phvul.002G287700 2.0kb upstream 2.0kb upstream 7390 true Chr02: 45684779-45692168 Phaseolus vulgaris
Phvul.002G287700 2.0kb upstream 2.0kb upstream 2000 false Chr02: 45684779-45686778 Phaseolus vulgaris
Phvul.002G287700 2.0kb downstream 2.0kb downstream 7390 true Chr02: 45686779-45694168 Phaseolus vulgaris
Phvul.002G287700 2.0kb downstream 2.0kb downstream 2000 false Chr02: 45692169-45694168 Phaseolus vulgaris
Phvul.002G287700 5.0kb upstream 5.0kb upstream 10390 true Chr02: 45681779-45692168 Phaseolus vulgaris
Phvul.002G287700 5.0kb upstream 5.0kb upstream 5000 false Chr02: 45681779-45686778 Phaseolus vulgaris
Phvul.002G287700 5.0kb downstream 5.0kb downstream 10390 true Chr02: 45686779-45697168 Phaseolus vulgaris
Phvul.002G287700 5.0kb downstream 5.0kb downstream 5000 false Chr02: 45692169-45697168 Phaseolus vulgaris
Phvul.002G287700 10.0kb upstream 10.0kb upstream 15390 true Chr02: 45676779-45692168 Phaseolus vulgaris
Phvul.002G287700 10.0kb upstream 10.0kb upstream 10000 false Chr02: 45676779-45686778 Phaseolus vulgaris
Phvul.002G287700 10.0kb downstream 10.0kb downstream 15390 true Chr02: 45686779-45702168 Phaseolus vulgaris
Phvul.002G287700 10.0kb downstream 10.0kb downstream 10000 false Chr02: 45692169-45702168 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040955 5273 Angiosperm View MSA
122311542 5265 Fabidae View MSA
124066145 5270 Rosid View MSA
123747619 5271 Pentapetalae View MSA
122785648 5272 Eudicot View MSA
121348283 5274 Embryophyte View MSA
123428094 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.490927 0.0 1.62687   Low
cufflinks 6.24389 0.0 16.2477    
cufflinks 24.4266 0.0 66.1084    
cufflinks 1.66727 0.0 4.86673   Low
cufflinks 12.8227 0.0 33.2249    
cufflinks 34.41 0.0 96.2605 High High
cufflinks 16.8452 0.0 44.3699    
cufflinks 6.73471 0.0 17.4576    
cufflinks 17.1606 0.0 45.2319    
cufflinks 9.76715 0.0 25.2472    
cufflinks 14.4599 0.0 37.6517    

0 Strain