Gene : Phvul.002G280100 P. vulgaris v2.1
Defline:  (1 of 2) K15979 - staphylococcal nuclease domain-containing protein 1 (SND1) Genomic Order:  2782
Name:  ? Phvul.002G280100 Secondary Identifier:  ? PAC:37176090
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G280100 0.5kb upstream 0.5kb upstream 7064 true Chr02: 44942369-44949432 Phaseolus vulgaris
Phvul.002G280100 0.5kb upstream 0.5kb upstream 500 false Chr02: 44942369-44942868 Phaseolus vulgaris
Phvul.002G280100 0.5kb downstream 0.5kb downstream 7064 true Chr02: 44942869-44949932 Phaseolus vulgaris
Phvul.002G280100 0.5kb downstream 0.5kb downstream 500 false Chr02: 44949433-44949932 Phaseolus vulgaris
Phvul.002G280100 1.0kb upstream 1.0kb upstream 7564 true Chr02: 44941869-44949432 Phaseolus vulgaris
Phvul.002G280100 1.0kb upstream 1.0kb upstream 1000 false Chr02: 44941869-44942868 Phaseolus vulgaris
Phvul.002G280100 1.0kb downstream 1.0kb downstream 7564 true Chr02: 44942869-44950432 Phaseolus vulgaris
Phvul.002G280100 1.0kb downstream 1.0kb downstream 1000 false Chr02: 44949433-44950432 Phaseolus vulgaris
Phvul.002G280100 2.0kb upstream 2.0kb upstream 8564 true Chr02: 44940869-44949432 Phaseolus vulgaris
Phvul.002G280100 2.0kb upstream 2.0kb upstream 2000 false Chr02: 44940869-44942868 Phaseolus vulgaris
Phvul.002G280100 2.0kb downstream 2.0kb downstream 8564 true Chr02: 44942869-44951432 Phaseolus vulgaris
Phvul.002G280100 2.0kb downstream 2.0kb downstream 2000 false Chr02: 44949433-44951432 Phaseolus vulgaris
Phvul.002G280100 5.0kb upstream 5.0kb upstream 11564 true Chr02: 44937869-44949432 Phaseolus vulgaris
Phvul.002G280100 5.0kb upstream 5.0kb upstream 5000 false Chr02: 44937869-44942868 Phaseolus vulgaris
Phvul.002G280100 5.0kb downstream 5.0kb downstream 11564 true Chr02: 44942869-44954432 Phaseolus vulgaris
Phvul.002G280100 5.0kb downstream 5.0kb downstream 5000 false Chr02: 44949433-44954432 Phaseolus vulgaris
Phvul.002G280100 10.0kb upstream 10.0kb upstream 16564 true Chr02: 44932869-44949432 Phaseolus vulgaris
Phvul.002G280100 10.0kb upstream 10.0kb upstream 10000 false Chr02: 44932869-44942868 Phaseolus vulgaris
Phvul.002G280100 10.0kb downstream 10.0kb downstream 16564 true Chr02: 44942869-44959432 Phaseolus vulgaris
Phvul.002G280100 10.0kb downstream 10.0kb downstream 10000 false Chr02: 44949433-44959432 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299003 5265 Fabidae View MSA
124063512 5270 Rosid View MSA
123750143 5271 Pentapetalae View MSA
122792240 5272 Eudicot View MSA
122045842 5273 Angiosperm View MSA
121344100 5274 Embryophyte View MSA
123426864 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.0312 0.0 58.2778   Low
cufflinks 53.3326 0.0 154.029 High  
cufflinks 62.5297 0.0 184.432 High  
cufflinks 36.8119 0.0 101.079 High Low
cufflinks 56.9389 0.0 164.413 High  
cufflinks 48.9721 0.0 139.957 High  
cufflinks 58.5318 0.0 171.76 High  
cufflinks 62.4878 0.0 185.496 High  
cufflinks 80.6387 0.0 247.378 High High
cufflinks 81.56 0.0 249.94 High High
cufflinks 61.2673 0.0 179.57 High  

0 Strain