Gene : Phvul.002G258500 P. vulgaris v2.1
Defline:  (1 of 3) PTHR31263:SF0 - CELLULASE (GLYCOSYL HYDROLASE FAMILY 5) PROTEIN-RELATED Genomic Order:  2561
Name:  ? Phvul.002G258500 Secondary Identifier:  ? PAC:37175344
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G258500 0.5kb upstream 0.5kb upstream 3287 true Chr02: 43019034-43022320 Phaseolus vulgaris
Phvul.002G258500 0.5kb upstream 0.5kb upstream 500 false Chr02: 43021821-43022320 Phaseolus vulgaris
Phvul.002G258500 0.5kb downstream 0.5kb downstream 3287 true Chr02: 43018534-43021820 Phaseolus vulgaris
Phvul.002G258500 0.5kb downstream 0.5kb downstream 500 false Chr02: 43018534-43019033 Phaseolus vulgaris
Phvul.002G258500 1.0kb upstream 1.0kb upstream 3787 true Chr02: 43019034-43022820 Phaseolus vulgaris
Phvul.002G258500 1.0kb upstream 1.0kb upstream 1000 false Chr02: 43021821-43022820 Phaseolus vulgaris
Phvul.002G258500 1.0kb downstream 1.0kb downstream 3787 true Chr02: 43018034-43021820 Phaseolus vulgaris
Phvul.002G258500 1.0kb downstream 1.0kb downstream 1000 false Chr02: 43018034-43019033 Phaseolus vulgaris
Phvul.002G258500 2.0kb upstream 2.0kb upstream 4787 true Chr02: 43019034-43023820 Phaseolus vulgaris
Phvul.002G258500 2.0kb upstream 2.0kb upstream 2000 false Chr02: 43021821-43023820 Phaseolus vulgaris
Phvul.002G258500 2.0kb downstream 2.0kb downstream 4787 true Chr02: 43017034-43021820 Phaseolus vulgaris
Phvul.002G258500 2.0kb downstream 2.0kb downstream 2000 false Chr02: 43017034-43019033 Phaseolus vulgaris
Phvul.002G258500 5.0kb upstream 5.0kb upstream 7787 true Chr02: 43019034-43026820 Phaseolus vulgaris
Phvul.002G258500 5.0kb upstream 5.0kb upstream 5000 false Chr02: 43021821-43026820 Phaseolus vulgaris
Phvul.002G258500 5.0kb downstream 5.0kb downstream 7787 true Chr02: 43014034-43021820 Phaseolus vulgaris
Phvul.002G258500 5.0kb downstream 5.0kb downstream 5000 false Chr02: 43014034-43019033 Phaseolus vulgaris
Phvul.002G258500 10.0kb upstream 10.0kb upstream 12787 true Chr02: 43019034-43031820 Phaseolus vulgaris
Phvul.002G258500 10.0kb upstream 10.0kb upstream 10000 false Chr02: 43021821-43031820 Phaseolus vulgaris
Phvul.002G258500 10.0kb downstream 10.0kb downstream 12787 true Chr02: 43009034-43021820 Phaseolus vulgaris
Phvul.002G258500 10.0kb downstream 10.0kb downstream 10000 false Chr02: 43009034-43019033 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027175 5273 Angiosperm View MSA
122307005 5265 Fabidae View MSA
124061714 5270 Rosid View MSA
123740079 5271 Pentapetalae View MSA
122789324 5272 Eudicot View MSA
121351116 5274 Embryophyte View MSA
123426514 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 71.2811 0.0 196.455 High High
cufflinks 6.48162 0.0 17.8377    
cufflinks 7.59988 0.0 20.6622    
cufflinks 25.3135 0.0 65.4531    
cufflinks 10.9194 0.0 28.9453    
cufflinks 5.92575 0.0 16.4382    
cufflinks 1.69637 0.0 5.37366   Low
cufflinks 0.561255 0.0 2.00397   Low
cufflinks 4.24057 0.0 12.1334    
cufflinks 63.1904 0.0 172.179 High High
cufflinks 7.47252 0.0 20.363    

0 Strain