Gene : Phvul.002G264800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR21087:SF8 - SHIKIMATE KINASE 1, CHLOROPLASTIC-RELATED Genomic Order:  2624
Name:  ? Phvul.002G264800 Secondary Identifier:  ? PAC:37177685
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris ARO-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-6163 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G264800 0.5kb upstream 0.5kb upstream 5769 true Chr02: 43598744-43604512 Phaseolus vulgaris
Phvul.002G264800 0.5kb upstream 0.5kb upstream 500 false Chr02: 43604013-43604512 Phaseolus vulgaris
Phvul.002G264800 0.5kb downstream 0.5kb downstream 5769 true Chr02: 43598244-43604012 Phaseolus vulgaris
Phvul.002G264800 0.5kb downstream 0.5kb downstream 500 false Chr02: 43598244-43598743 Phaseolus vulgaris
Phvul.002G264800 1.0kb upstream 1.0kb upstream 6269 true Chr02: 43598744-43605012 Phaseolus vulgaris
Phvul.002G264800 1.0kb upstream 1.0kb upstream 1000 false Chr02: 43604013-43605012 Phaseolus vulgaris
Phvul.002G264800 1.0kb downstream 1.0kb downstream 6269 true Chr02: 43597744-43604012 Phaseolus vulgaris
Phvul.002G264800 1.0kb downstream 1.0kb downstream 1000 false Chr02: 43597744-43598743 Phaseolus vulgaris
Phvul.002G264800 2.0kb upstream 2.0kb upstream 7269 true Chr02: 43598744-43606012 Phaseolus vulgaris
Phvul.002G264800 2.0kb upstream 2.0kb upstream 2000 false Chr02: 43604013-43606012 Phaseolus vulgaris
Phvul.002G264800 2.0kb downstream 2.0kb downstream 7269 true Chr02: 43596744-43604012 Phaseolus vulgaris
Phvul.002G264800 2.0kb downstream 2.0kb downstream 2000 false Chr02: 43596744-43598743 Phaseolus vulgaris
Phvul.002G264800 5.0kb upstream 5.0kb upstream 10269 true Chr02: 43598744-43609012 Phaseolus vulgaris
Phvul.002G264800 5.0kb upstream 5.0kb upstream 5000 false Chr02: 43604013-43609012 Phaseolus vulgaris
Phvul.002G264800 5.0kb downstream 5.0kb downstream 10269 true Chr02: 43593744-43604012 Phaseolus vulgaris
Phvul.002G264800 5.0kb downstream 5.0kb downstream 5000 false Chr02: 43593744-43598743 Phaseolus vulgaris
Phvul.002G264800 10.0kb upstream 10.0kb upstream 15269 true Chr02: 43598744-43614012 Phaseolus vulgaris
Phvul.002G264800 10.0kb upstream 10.0kb upstream 10000 false Chr02: 43604013-43614012 Phaseolus vulgaris
Phvul.002G264800 10.0kb downstream 10.0kb downstream 15269 true Chr02: 43588744-43604012 Phaseolus vulgaris
Phvul.002G264800 10.0kb downstream 10.0kb downstream 10000 false Chr02: 43588744-43598743 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301423 5265 Fabidae View MSA
124073160 5270 Rosid View MSA
123746904 5271 Pentapetalae View MSA
122797267 5272 Eudicot View MSA
122046124 5273 Angiosperm View MSA
121349272 5274 Embryophyte View MSA
123425467 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.0022 0.0 32.349    
cufflinks 8.66664 0.0 24.0526   Low
cufflinks 13.595 0.0 36.2945    
cufflinks 20.3983 0.0 53.342    
cufflinks 39.27 0.0 101.62 High High
cufflinks 11.1523 0.0 30.2382    
cufflinks 27.0297 0.0 69.9231    
cufflinks 10.448 0.0 28.4307    
cufflinks 34.8109 0.0 90.0044 High High
cufflinks 14.76 0.0 39.2487    
cufflinks 41.7427 0.0 108.185 High High

0 Strain