Gene : Phvul.002G247600 P. vulgaris v2.1
Defline:  (1 of 1) 3.4.22.54 - Calpain-3 / Muscle-specific calcium-activated neutral protease 3 Genomic Order:  2448
Name:  ? Phvul.002G247600 Secondary Identifier:  ? PAC:37174500
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G247600 0.5kb upstream 0.5kb upstream 26681 true Chr02: 41968406-41995086 Phaseolus vulgaris
Phvul.002G247600 0.5kb upstream 0.5kb upstream 500 false Chr02: 41968406-41968905 Phaseolus vulgaris
Phvul.002G247600 0.5kb downstream 0.5kb downstream 26681 true Chr02: 41968906-41995586 Phaseolus vulgaris
Phvul.002G247600 0.5kb downstream 0.5kb downstream 500 false Chr02: 41995087-41995586 Phaseolus vulgaris
Phvul.002G247600 1.0kb upstream 1.0kb upstream 27181 true Chr02: 41967906-41995086 Phaseolus vulgaris
Phvul.002G247600 1.0kb upstream 1.0kb upstream 1000 false Chr02: 41967906-41968905 Phaseolus vulgaris
Phvul.002G247600 1.0kb downstream 1.0kb downstream 27181 true Chr02: 41968906-41996086 Phaseolus vulgaris
Phvul.002G247600 1.0kb downstream 1.0kb downstream 1000 false Chr02: 41995087-41996086 Phaseolus vulgaris
Phvul.002G247600 2.0kb upstream 2.0kb upstream 28181 true Chr02: 41966906-41995086 Phaseolus vulgaris
Phvul.002G247600 2.0kb upstream 2.0kb upstream 2000 false Chr02: 41966906-41968905 Phaseolus vulgaris
Phvul.002G247600 2.0kb downstream 2.0kb downstream 28181 true Chr02: 41968906-41997086 Phaseolus vulgaris
Phvul.002G247600 2.0kb downstream 2.0kb downstream 2000 false Chr02: 41995087-41997086 Phaseolus vulgaris
Phvul.002G247600 5.0kb upstream 5.0kb upstream 31181 true Chr02: 41963906-41995086 Phaseolus vulgaris
Phvul.002G247600 5.0kb upstream 5.0kb upstream 5000 false Chr02: 41963906-41968905 Phaseolus vulgaris
Phvul.002G247600 5.0kb downstream 5.0kb downstream 31181 true Chr02: 41968906-42000086 Phaseolus vulgaris
Phvul.002G247600 5.0kb downstream 5.0kb downstream 5000 false Chr02: 41995087-42000086 Phaseolus vulgaris
Phvul.002G247600 10.0kb upstream 10.0kb upstream 36181 true Chr02: 41958906-41995086 Phaseolus vulgaris
Phvul.002G247600 10.0kb upstream 10.0kb upstream 10000 false Chr02: 41958906-41968905 Phaseolus vulgaris
Phvul.002G247600 10.0kb downstream 10.0kb downstream 36181 true Chr02: 41968906-42005086 Phaseolus vulgaris
Phvul.002G247600 10.0kb downstream 10.0kb downstream 10000 false Chr02: 41995087-42005086 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300937 5265 Fabidae View MSA
124067858 5270 Rosid View MSA
123739465 5271 Pentapetalae View MSA
122788693 5272 Eudicot View MSA
122043542 5273 Angiosperm View MSA
121345747 5274 Embryophyte View MSA
123380263 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.35929 0.0 6.31389   Low
cufflinks 8.25543 0.0 21.4751    
cufflinks 16.0557 0.0 43.7254   High
cufflinks 2.931 0.0 7.78693   Low
cufflinks 9.0946 0.0 23.6997    
cufflinks 13.5391 0.0 36.2734    
cufflinks 14.2732 0.0 38.3529    
cufflinks 11.4357 0.0 30.3082    
cufflinks 9.81149 0.0 25.6524    
cufflinks 12.8304 0.0 34.2137    
cufflinks 7.5977 0.0 19.6932    

0 Strain