Gene : Phvul.002G252000 P. vulgaris v2.1
Defline:  (1 of 1) PTHR31747:SF3 - PROTEIN LSD1 Genomic Order:  2496
Name:  ? Phvul.002G252000 Secondary Identifier:  ? PAC:37177791
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G252000 0.5kb upstream 0.5kb upstream 5226 true Chr02: 42426076-42431301 Phaseolus vulgaris
Phvul.002G252000 0.5kb upstream 0.5kb upstream 500 false Chr02: 42426076-42426575 Phaseolus vulgaris
Phvul.002G252000 0.5kb downstream 0.5kb downstream 5226 true Chr02: 42426576-42431801 Phaseolus vulgaris
Phvul.002G252000 0.5kb downstream 0.5kb downstream 500 false Chr02: 42431302-42431801 Phaseolus vulgaris
Phvul.002G252000 1.0kb upstream 1.0kb upstream 5726 true Chr02: 42425576-42431301 Phaseolus vulgaris
Phvul.002G252000 1.0kb upstream 1.0kb upstream 1000 false Chr02: 42425576-42426575 Phaseolus vulgaris
Phvul.002G252000 1.0kb downstream 1.0kb downstream 5726 true Chr02: 42426576-42432301 Phaseolus vulgaris
Phvul.002G252000 1.0kb downstream 1.0kb downstream 1000 false Chr02: 42431302-42432301 Phaseolus vulgaris
Phvul.002G252000 2.0kb upstream 2.0kb upstream 6726 true Chr02: 42424576-42431301 Phaseolus vulgaris
Phvul.002G252000 2.0kb upstream 2.0kb upstream 2000 false Chr02: 42424576-42426575 Phaseolus vulgaris
Phvul.002G252000 2.0kb downstream 2.0kb downstream 6726 true Chr02: 42426576-42433301 Phaseolus vulgaris
Phvul.002G252000 2.0kb downstream 2.0kb downstream 2000 false Chr02: 42431302-42433301 Phaseolus vulgaris
Phvul.002G252000 5.0kb upstream 5.0kb upstream 9726 true Chr02: 42421576-42431301 Phaseolus vulgaris
Phvul.002G252000 5.0kb upstream 5.0kb upstream 5000 false Chr02: 42421576-42426575 Phaseolus vulgaris
Phvul.002G252000 5.0kb downstream 5.0kb downstream 9726 true Chr02: 42426576-42436301 Phaseolus vulgaris
Phvul.002G252000 5.0kb downstream 5.0kb downstream 5000 false Chr02: 42431302-42436301 Phaseolus vulgaris
Phvul.002G252000 10.0kb upstream 10.0kb upstream 14726 true Chr02: 42416576-42431301 Phaseolus vulgaris
Phvul.002G252000 10.0kb upstream 10.0kb upstream 10000 false Chr02: 42416576-42426575 Phaseolus vulgaris
Phvul.002G252000 10.0kb downstream 10.0kb downstream 14726 true Chr02: 42426576-42441301 Phaseolus vulgaris
Phvul.002G252000 10.0kb downstream 10.0kb downstream 10000 false Chr02: 42431302-42441301 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304493 5265 Fabidae View MSA
124064125 5270 Rosid View MSA
123749218 5271 Pentapetalae View MSA
122793241 5272 Eudicot View MSA
122043941 5273 Angiosperm View MSA
121347680 5274 Embryophyte View MSA
123425652 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 55.169 0.0 175.591 High High
cufflinks 22.6175 0.0 78.1038    
cufflinks 21.3379 0.0 74.1686   Low
cufflinks 37.3285 0.0 120.599 High  
cufflinks 28.2982 0.0 94.7068    
cufflinks 17.9443 0.0 64.79   Low
cufflinks 37.331 0.0 120.502 High  
cufflinks 26.6751 0.0 89.2288    
cufflinks 33.6051 0.0 109.486 High  
cufflinks 36.4512 0.0 118.153 High  
cufflinks 30.332 0.0 100.677    

0 Strain