Gene : Phvul.003G031500 P. vulgaris v2.1
Defline:  (1 of 8) K15601 - lysine-specific demethylase 3 [EC:1.14.11.-] (KDM3) Genomic Order:  322
Name:  ? Phvul.003G031500 Secondary Identifier:  ? PAC:37147655
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G031500 0.5kb upstream 0.5kb upstream 14901 true Chr03: 3188547-3203447 Phaseolus vulgaris
Phvul.003G031500 0.5kb upstream 0.5kb upstream 500 false Chr03: 3188547-3189046 Phaseolus vulgaris
Phvul.003G031500 0.5kb downstream 0.5kb downstream 14901 true Chr03: 3189047-3203947 Phaseolus vulgaris
Phvul.003G031500 0.5kb downstream 0.5kb downstream 500 false Chr03: 3203448-3203947 Phaseolus vulgaris
Phvul.003G031500 1.0kb upstream 1.0kb upstream 15401 true Chr03: 3188047-3203447 Phaseolus vulgaris
Phvul.003G031500 1.0kb upstream 1.0kb upstream 1000 false Chr03: 3188047-3189046 Phaseolus vulgaris
Phvul.003G031500 1.0kb downstream 1.0kb downstream 15401 true Chr03: 3189047-3204447 Phaseolus vulgaris
Phvul.003G031500 1.0kb downstream 1.0kb downstream 1000 false Chr03: 3203448-3204447 Phaseolus vulgaris
Phvul.003G031500 2.0kb upstream 2.0kb upstream 16401 true Chr03: 3187047-3203447 Phaseolus vulgaris
Phvul.003G031500 2.0kb upstream 2.0kb upstream 2000 false Chr03: 3187047-3189046 Phaseolus vulgaris
Phvul.003G031500 2.0kb downstream 2.0kb downstream 16401 true Chr03: 3189047-3205447 Phaseolus vulgaris
Phvul.003G031500 2.0kb downstream 2.0kb downstream 2000 false Chr03: 3203448-3205447 Phaseolus vulgaris
Phvul.003G031500 5.0kb upstream 5.0kb upstream 19401 true Chr03: 3184047-3203447 Phaseolus vulgaris
Phvul.003G031500 5.0kb upstream 5.0kb upstream 5000 false Chr03: 3184047-3189046 Phaseolus vulgaris
Phvul.003G031500 5.0kb downstream 5.0kb downstream 19401 true Chr03: 3189047-3208447 Phaseolus vulgaris
Phvul.003G031500 5.0kb downstream 5.0kb downstream 5000 false Chr03: 3203448-3208447 Phaseolus vulgaris
Phvul.003G031500 10.0kb upstream 10.0kb upstream 24401 true Chr03: 3179047-3203447 Phaseolus vulgaris
Phvul.003G031500 10.0kb upstream 10.0kb upstream 10000 false Chr03: 3179047-3189046 Phaseolus vulgaris
Phvul.003G031500 10.0kb downstream 10.0kb downstream 24401 true Chr03: 3189047-3213447 Phaseolus vulgaris
Phvul.003G031500 10.0kb downstream 10.0kb downstream 10000 false Chr03: 3203448-3213447 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122253550 5265 Fabidae View MSA
124073545 5270 Rosid View MSA
123747808 5271 Pentapetalae View MSA
122796242 5272 Eudicot View MSA
122050393 5273 Angiosperm View MSA
121349542 5274 Embryophyte View MSA
123425923 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.56295 0.0 4.74082   Low
cufflinks 4.4249 0.0 12.0772    
cufflinks 3.45231 0.0 9.59577    
cufflinks 1.73041 0.0 5.26279   Low
cufflinks 2.82127 0.0 8.08538    
cufflinks 4.87044 0.0 13.1718    
cufflinks 4.66397 0.0 12.6679    
cufflinks 6.36033 0.0 16.8028   High
cufflinks 3.76266 0.0 10.4457    
cufflinks 2.73391 0.0 7.80802    
cufflinks 3.24213 0.0 9.13931    

0 Strain