Gene : Phvul.003G020100 P. vulgaris v2.1
Defline:  (1 of 4) PTHR10209//PTHR10209:SF148 - OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  210
Name:  ? Phvul.003G020100 Secondary Identifier:  ? PAC:37147277
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G020100 0.5kb upstream 0.5kb upstream 3198 true Chr03: 1925820-1929017 Phaseolus vulgaris
Phvul.003G020100 0.5kb upstream 0.5kb upstream 500 false Chr03: 1928518-1929017 Phaseolus vulgaris
Phvul.003G020100 0.5kb downstream 0.5kb downstream 3198 true Chr03: 1925320-1928517 Phaseolus vulgaris
Phvul.003G020100 0.5kb downstream 0.5kb downstream 500 false Chr03: 1925320-1925819 Phaseolus vulgaris
Phvul.003G020100 1.0kb upstream 1.0kb upstream 3698 true Chr03: 1925820-1929517 Phaseolus vulgaris
Phvul.003G020100 1.0kb upstream 1.0kb upstream 1000 false Chr03: 1928518-1929517 Phaseolus vulgaris
Phvul.003G020100 1.0kb downstream 1.0kb downstream 3698 true Chr03: 1924820-1928517 Phaseolus vulgaris
Phvul.003G020100 1.0kb downstream 1.0kb downstream 1000 false Chr03: 1924820-1925819 Phaseolus vulgaris
Phvul.003G020100 2.0kb upstream 2.0kb upstream 4698 true Chr03: 1925820-1930517 Phaseolus vulgaris
Phvul.003G020100 2.0kb upstream 2.0kb upstream 2000 false Chr03: 1928518-1930517 Phaseolus vulgaris
Phvul.003G020100 2.0kb downstream 2.0kb downstream 4698 true Chr03: 1923820-1928517 Phaseolus vulgaris
Phvul.003G020100 2.0kb downstream 2.0kb downstream 2000 false Chr03: 1923820-1925819 Phaseolus vulgaris
Phvul.003G020100 5.0kb upstream 5.0kb upstream 7698 true Chr03: 1925820-1933517 Phaseolus vulgaris
Phvul.003G020100 5.0kb upstream 5.0kb upstream 5000 false Chr03: 1928518-1933517 Phaseolus vulgaris
Phvul.003G020100 5.0kb downstream 5.0kb downstream 7698 true Chr03: 1920820-1928517 Phaseolus vulgaris
Phvul.003G020100 5.0kb downstream 5.0kb downstream 5000 false Chr03: 1920820-1925819 Phaseolus vulgaris
Phvul.003G020100 10.0kb upstream 10.0kb upstream 12698 true Chr03: 1925820-1938517 Phaseolus vulgaris
Phvul.003G020100 10.0kb upstream 10.0kb upstream 10000 false Chr03: 1928518-1938517 Phaseolus vulgaris
Phvul.003G020100 10.0kb downstream 10.0kb downstream 12698 true Chr03: 1915820-1928517 Phaseolus vulgaris
Phvul.003G020100 10.0kb downstream 10.0kb downstream 10000 false Chr03: 1915820-1925819 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301513 5265 Fabidae View MSA
124071640 5270 Rosid View MSA
123753505 5271 Pentapetalae View MSA
122796711 5272 Eudicot View MSA
122051611 5273 Angiosperm View MSA
123429101 5275 Viridiplantae View MSA
121351374 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.1352 0.0 32.0965   High
cufflinks 1.4089 0.0 4.65073    
cufflinks 0.140016 0.0 0.573769 Low Low
cufflinks 3.47524 0.0 10.3335   High
cufflinks 0.463109 0.0 1.70594 Low  
cufflinks 0.169399 0.0 0.680041 Low Low
cufflinks 0.393755 0.0 1.46453 Low  
cufflinks 0.6846 0.0 2.43919    
cufflinks 0.68937 0.0 2.44484    
cufflinks 1.79547 0.0 5.75106    
cufflinks 0.925333 0.0 3.1748    

0 Strain