Gene : Phvul.003G009700 P. vulgaris v2.1
Defline:  (1 of 197) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  105
Name:  ? Phvul.003G009700 Secondary Identifier:  ? PAC:37147614
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G009700 0.5kb upstream 0.5kb upstream 3594 true Chr03: 1073865-1077458 Phaseolus vulgaris
Phvul.003G009700 0.5kb upstream 0.5kb upstream 500 false Chr03: 1073865-1074364 Phaseolus vulgaris
Phvul.003G009700 0.5kb downstream 0.5kb downstream 3594 true Chr03: 1074365-1077958 Phaseolus vulgaris
Phvul.003G009700 0.5kb downstream 0.5kb downstream 500 false Chr03: 1077459-1077958 Phaseolus vulgaris
Phvul.003G009700 1.0kb upstream 1.0kb upstream 4094 true Chr03: 1073365-1077458 Phaseolus vulgaris
Phvul.003G009700 1.0kb upstream 1.0kb upstream 1000 false Chr03: 1073365-1074364 Phaseolus vulgaris
Phvul.003G009700 1.0kb downstream 1.0kb downstream 4094 true Chr03: 1074365-1078458 Phaseolus vulgaris
Phvul.003G009700 1.0kb downstream 1.0kb downstream 1000 false Chr03: 1077459-1078458 Phaseolus vulgaris
Phvul.003G009700 2.0kb upstream 2.0kb upstream 5094 true Chr03: 1072365-1077458 Phaseolus vulgaris
Phvul.003G009700 2.0kb upstream 2.0kb upstream 2000 false Chr03: 1072365-1074364 Phaseolus vulgaris
Phvul.003G009700 2.0kb downstream 2.0kb downstream 5094 true Chr03: 1074365-1079458 Phaseolus vulgaris
Phvul.003G009700 2.0kb downstream 2.0kb downstream 2000 false Chr03: 1077459-1079458 Phaseolus vulgaris
Phvul.003G009700 5.0kb upstream 5.0kb upstream 8094 true Chr03: 1069365-1077458 Phaseolus vulgaris
Phvul.003G009700 5.0kb upstream 5.0kb upstream 5000 false Chr03: 1069365-1074364 Phaseolus vulgaris
Phvul.003G009700 5.0kb downstream 5.0kb downstream 8094 true Chr03: 1074365-1082458 Phaseolus vulgaris
Phvul.003G009700 5.0kb downstream 5.0kb downstream 5000 false Chr03: 1077459-1082458 Phaseolus vulgaris
Phvul.003G009700 10.0kb upstream 10.0kb upstream 13094 true Chr03: 1064365-1077458 Phaseolus vulgaris
Phvul.003G009700 10.0kb upstream 10.0kb upstream 10000 false Chr03: 1064365-1074364 Phaseolus vulgaris
Phvul.003G009700 10.0kb downstream 10.0kb downstream 13094 true Chr03: 1074365-1087458 Phaseolus vulgaris
Phvul.003G009700 10.0kb downstream 10.0kb downstream 10000 false Chr03: 1077459-1087458 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300852 5265 Fabidae View MSA
124064128 5270 Rosid View MSA
123740328 5271 Pentapetalae View MSA
122789927 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.549805 0.0 1.85586   Low
cufflinks 1.14257 0.0 3.5539    
cufflinks 0.785887 0.0 2.55722    
cufflinks 0.894139 0.0 2.89862    
cufflinks 0.92881 0.0 2.96146    
cufflinks 0.927454 0.0 2.95646    
cufflinks 0.855798 0.0 2.74316    
cufflinks 1.46317 0.0 4.40653   High
cufflinks 0.908376 0.0 2.90586    
cufflinks 1.48737 0.0 4.48599   High
cufflinks 0.750565 0.0 2.44732    

0 Strain