Gene : Phvul.003G003800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11945:SF242 - PROTEIN TRANSPARENT TESTA 16 Genomic Order:  25
Name:  ? Phvul.003G003800 Secondary Identifier:  ? PAC:37145613
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G003800 0.5kb upstream 0.5kb upstream 4860 true Chr03: 234861-239720 Phaseolus vulgaris
Phvul.003G003800 0.5kb upstream 0.5kb upstream 500 false Chr03: 234861-235360 Phaseolus vulgaris
Phvul.003G003800 0.5kb downstream 0.5kb downstream 4860 true Chr03: 235361-240220 Phaseolus vulgaris
Phvul.003G003800 0.5kb downstream 0.5kb downstream 500 false Chr03: 239721-240220 Phaseolus vulgaris
Phvul.003G003800 1.0kb upstream 1.0kb upstream 5360 true Chr03: 234361-239720 Phaseolus vulgaris
Phvul.003G003800 1.0kb upstream 1.0kb upstream 1000 false Chr03: 234361-235360 Phaseolus vulgaris
Phvul.003G003800 1.0kb downstream 1.0kb downstream 5360 true Chr03: 235361-240720 Phaseolus vulgaris
Phvul.003G003800 1.0kb downstream 1.0kb downstream 1000 false Chr03: 239721-240720 Phaseolus vulgaris
Phvul.003G003800 2.0kb upstream 2.0kb upstream 6360 true Chr03: 233361-239720 Phaseolus vulgaris
Phvul.003G003800 2.0kb upstream 2.0kb upstream 2000 false Chr03: 233361-235360 Phaseolus vulgaris
Phvul.003G003800 2.0kb downstream 2.0kb downstream 6360 true Chr03: 235361-241720 Phaseolus vulgaris
Phvul.003G003800 2.0kb downstream 2.0kb downstream 2000 false Chr03: 239721-241720 Phaseolus vulgaris
Phvul.003G003800 5.0kb upstream 5.0kb upstream 9360 true Chr03: 230361-239720 Phaseolus vulgaris
Phvul.003G003800 5.0kb upstream 5.0kb upstream 5000 false Chr03: 230361-235360 Phaseolus vulgaris
Phvul.003G003800 5.0kb downstream 5.0kb downstream 9360 true Chr03: 235361-244720 Phaseolus vulgaris
Phvul.003G003800 5.0kb downstream 5.0kb downstream 5000 false Chr03: 239721-244720 Phaseolus vulgaris
Phvul.003G003800 10.0kb upstream 10.0kb upstream 14360 true Chr03: 225361-239720 Phaseolus vulgaris
Phvul.003G003800 10.0kb upstream 10.0kb upstream 10000 false Chr03: 225361-235360 Phaseolus vulgaris
Phvul.003G003800 10.0kb downstream 10.0kb downstream 14360 true Chr03: 235361-249720 Phaseolus vulgaris
Phvul.003G003800 10.0kb downstream 10.0kb downstream 10000 false Chr03: 239721-249720 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307395 5265 Fabidae View MSA
124062898 5270 Rosid View MSA
123748976 5271 Pentapetalae View MSA
122793472 5272 Eudicot View MSA
122046677 5273 Angiosperm View MSA
121350957 5274 Embryophyte View MSA
123424057 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0803146 0.0 0.369679 Low  
cufflinks 1.28202 0.0 4.63383   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0307828 0.0 0.155861 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0847055 0.0 0.388447 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed

0 Strain