Gene : Phvul.003G004200 P. vulgaris v2.1
Defline:  (1 of 2) K15171 - transcription elongation factor SPT4 (SUPT4H1, SPT4) Genomic Order:  21
Name:  ? Phvul.003G004200 Secondary Identifier:  ? PAC:37146526
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G004200 0.5kb upstream 0.5kb upstream 4622 true Chr03: 187261-191882 Phaseolus vulgaris
Phvul.003G004200 0.5kb upstream 0.5kb upstream 500 false Chr03: 187261-187760 Phaseolus vulgaris
Phvul.003G004200 0.5kb downstream 0.5kb downstream 4622 true Chr03: 187761-192382 Phaseolus vulgaris
Phvul.003G004200 0.5kb downstream 0.5kb downstream 500 false Chr03: 191883-192382 Phaseolus vulgaris
Phvul.003G004200 1.0kb upstream 1.0kb upstream 5122 true Chr03: 186761-191882 Phaseolus vulgaris
Phvul.003G004200 1.0kb upstream 1.0kb upstream 1000 false Chr03: 186761-187760 Phaseolus vulgaris
Phvul.003G004200 1.0kb downstream 1.0kb downstream 5122 true Chr03: 187761-192882 Phaseolus vulgaris
Phvul.003G004200 1.0kb downstream 1.0kb downstream 1000 false Chr03: 191883-192882 Phaseolus vulgaris
Phvul.003G004200 2.0kb upstream 2.0kb upstream 6122 true Chr03: 185761-191882 Phaseolus vulgaris
Phvul.003G004200 2.0kb upstream 2.0kb upstream 2000 false Chr03: 185761-187760 Phaseolus vulgaris
Phvul.003G004200 2.0kb downstream 2.0kb downstream 6122 true Chr03: 187761-193882 Phaseolus vulgaris
Phvul.003G004200 2.0kb downstream 2.0kb downstream 2000 false Chr03: 191883-193882 Phaseolus vulgaris
Phvul.003G004200 5.0kb upstream 5.0kb upstream 9122 true Chr03: 182761-191882 Phaseolus vulgaris
Phvul.003G004200 5.0kb upstream 5.0kb upstream 5000 false Chr03: 182761-187760 Phaseolus vulgaris
Phvul.003G004200 5.0kb downstream 5.0kb downstream 9122 true Chr03: 187761-196882 Phaseolus vulgaris
Phvul.003G004200 5.0kb downstream 5.0kb downstream 5000 false Chr03: 191883-196882 Phaseolus vulgaris
Phvul.003G004200 10.0kb upstream 10.0kb upstream 14122 true Chr03: 177761-191882 Phaseolus vulgaris
Phvul.003G004200 10.0kb upstream 10.0kb upstream 10000 false Chr03: 177761-187760 Phaseolus vulgaris
Phvul.003G004200 10.0kb downstream 10.0kb downstream 14122 true Chr03: 187761-201882 Phaseolus vulgaris
Phvul.003G004200 10.0kb downstream 10.0kb downstream 10000 false Chr03: 191883-201882 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302293 5265 Fabidae View MSA
124065394 5270 Rosid View MSA
123740657 5271 Pentapetalae View MSA
122786663 5272 Eudicot View MSA
122042342 5273 Angiosperm View MSA
121345840 5274 Embryophyte View MSA
123426410 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.7771 0.0 32.3095    
cufflinks 12.9015 0.0 37.9536    
cufflinks 7.35622 0.0 23.0517   Low
cufflinks 20.9979 0.0 58.4689   High
cufflinks 9.83205 0.0 29.5705    
cufflinks 6.20162 0.0 19.8811   Low
cufflinks 8.44692 0.0 26.0041    
cufflinks 9.8475 0.0 29.8465    
cufflinks 10.3426 0.0 31.2135    
cufflinks 9.87828 0.0 29.9241    
cufflinks 11.1791 0.0 33.2575    

0 Strain