Gene : Phvul.002G318600 P. vulgaris v2.1
Defline:  (1 of 3) 6.1.1.12 - Aspartate--tRNA ligase / Aspartyl-tRNA synthetase Genomic Order:  3179
Name:  ? Phvul.002G318600 Secondary Identifier:  ? PAC:37178176
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris TRNA-CHARGING-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G318600 0.5kb upstream 0.5kb upstream 8727 true Chr02: 48476268-48484994 Phaseolus vulgaris
Phvul.002G318600 0.5kb upstream 0.5kb upstream 500 false Chr02: 48484495-48484994 Phaseolus vulgaris
Phvul.002G318600 0.5kb downstream 0.5kb downstream 8727 true Chr02: 48475768-48484494 Phaseolus vulgaris
Phvul.002G318600 0.5kb downstream 0.5kb downstream 500 false Chr02: 48475768-48476267 Phaseolus vulgaris
Phvul.002G318600 1.0kb upstream 1.0kb upstream 9227 true Chr02: 48476268-48485494 Phaseolus vulgaris
Phvul.002G318600 1.0kb upstream 1.0kb upstream 1000 false Chr02: 48484495-48485494 Phaseolus vulgaris
Phvul.002G318600 1.0kb downstream 1.0kb downstream 9227 true Chr02: 48475268-48484494 Phaseolus vulgaris
Phvul.002G318600 1.0kb downstream 1.0kb downstream 1000 false Chr02: 48475268-48476267 Phaseolus vulgaris
Phvul.002G318600 2.0kb upstream 2.0kb upstream 10227 true Chr02: 48476268-48486494 Phaseolus vulgaris
Phvul.002G318600 2.0kb upstream 2.0kb upstream 2000 false Chr02: 48484495-48486494 Phaseolus vulgaris
Phvul.002G318600 2.0kb downstream 2.0kb downstream 10227 true Chr02: 48474268-48484494 Phaseolus vulgaris
Phvul.002G318600 2.0kb downstream 2.0kb downstream 2000 false Chr02: 48474268-48476267 Phaseolus vulgaris
Phvul.002G318600 5.0kb upstream 5.0kb upstream 13227 true Chr02: 48476268-48489494 Phaseolus vulgaris
Phvul.002G318600 5.0kb upstream 5.0kb upstream 5000 false Chr02: 48484495-48489494 Phaseolus vulgaris
Phvul.002G318600 5.0kb downstream 5.0kb downstream 13227 true Chr02: 48471268-48484494 Phaseolus vulgaris
Phvul.002G318600 5.0kb downstream 5.0kb downstream 5000 false Chr02: 48471268-48476267 Phaseolus vulgaris
Phvul.002G318600 10.0kb upstream 10.0kb upstream 18227 true Chr02: 48476268-48494494 Phaseolus vulgaris
Phvul.002G318600 10.0kb upstream 10.0kb upstream 10000 false Chr02: 48484495-48494494 Phaseolus vulgaris
Phvul.002G318600 10.0kb downstream 10.0kb downstream 18227 true Chr02: 48466268-48484494 Phaseolus vulgaris
Phvul.002G318600 10.0kb downstream 10.0kb downstream 10000 false Chr02: 48466268-48476267 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304269 5265 Fabidae View MSA
124067030 5270 Rosid View MSA
123742204 5271 Pentapetalae View MSA
122792299 5272 Eudicot View MSA
122041718 5273 Angiosperm View MSA
121346039 5274 Embryophyte View MSA
123424871 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.56032 0.0 20.1565   Low
cufflinks 11.6952 0.0 30.4606    
cufflinks 27.8757 0.0 72.8517   High
cufflinks 7.43801 0.0 19.9852   Low
cufflinks 11.1584 0.0 29.1902    
cufflinks 16.0128 0.0 41.4077    
cufflinks 11.6445 0.0 30.3275    
cufflinks 14.3655 0.0 37.1676    
cufflinks 10.3232 0.0 27.0914    
cufflinks 12.876 0.0 33.4293    
cufflinks 7.05677 0.0 19.0338   Low

0 Strain