Gene : Phvul.002G317500 P. vulgaris v2.1
Defline:  (1 of 2) PTHR12947:SF10 - AMSH-LIKE UBIQUITIN THIOESTERASE 1 Genomic Order:  3168
Name:  ? Phvul.002G317500 Secondary Identifier:  ? PAC:37176246
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.002G317500 0.5kb upstream 0.5kb upstream 7980 true Chr02: 48377908-48385887 Phaseolus vulgaris
Phvul.002G317500 0.5kb upstream 0.5kb upstream 500 false Chr02: 48377908-48378407 Phaseolus vulgaris
Phvul.002G317500 0.5kb downstream 0.5kb downstream 7980 true Chr02: 48378408-48386387 Phaseolus vulgaris
Phvul.002G317500 0.5kb downstream 0.5kb downstream 500 false Chr02: 48385888-48386387 Phaseolus vulgaris
Phvul.002G317500 1.0kb upstream 1.0kb upstream 8480 true Chr02: 48377408-48385887 Phaseolus vulgaris
Phvul.002G317500 1.0kb upstream 1.0kb upstream 1000 false Chr02: 48377408-48378407 Phaseolus vulgaris
Phvul.002G317500 1.0kb downstream 1.0kb downstream 8480 true Chr02: 48378408-48386887 Phaseolus vulgaris
Phvul.002G317500 1.0kb downstream 1.0kb downstream 1000 false Chr02: 48385888-48386887 Phaseolus vulgaris
Phvul.002G317500 2.0kb upstream 2.0kb upstream 9480 true Chr02: 48376408-48385887 Phaseolus vulgaris
Phvul.002G317500 2.0kb upstream 2.0kb upstream 2000 false Chr02: 48376408-48378407 Phaseolus vulgaris
Phvul.002G317500 2.0kb downstream 2.0kb downstream 9480 true Chr02: 48378408-48387887 Phaseolus vulgaris
Phvul.002G317500 2.0kb downstream 2.0kb downstream 2000 false Chr02: 48385888-48387887 Phaseolus vulgaris
Phvul.002G317500 5.0kb upstream 5.0kb upstream 12480 true Chr02: 48373408-48385887 Phaseolus vulgaris
Phvul.002G317500 5.0kb upstream 5.0kb upstream 5000 false Chr02: 48373408-48378407 Phaseolus vulgaris
Phvul.002G317500 5.0kb downstream 5.0kb downstream 12480 true Chr02: 48378408-48390887 Phaseolus vulgaris
Phvul.002G317500 5.0kb downstream 5.0kb downstream 5000 false Chr02: 48385888-48390887 Phaseolus vulgaris
Phvul.002G317500 10.0kb upstream 10.0kb upstream 17480 true Chr02: 48368408-48385887 Phaseolus vulgaris
Phvul.002G317500 10.0kb upstream 10.0kb upstream 10000 false Chr02: 48368408-48378407 Phaseolus vulgaris
Phvul.002G317500 10.0kb downstream 10.0kb downstream 17480 true Chr02: 48378408-48395887 Phaseolus vulgaris
Phvul.002G317500 10.0kb downstream 10.0kb downstream 10000 false Chr02: 48385888-48395887 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310109 5265 Fabidae View MSA
124064531 5270 Rosid View MSA
123740855 5271 Pentapetalae View MSA
122786605 5272 Eudicot View MSA
122049356 5273 Angiosperm View MSA
121351478 5274 Embryophyte View MSA
123425499 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.53479 0.0 13.1384    
cufflinks 3.78352 0.0 11.2059   Low
cufflinks 9.10573 0.0 24.6962    
cufflinks 3.934 0.0 11.6283   Low
cufflinks 5.62716 0.0 16.1064    
cufflinks 6.80993 0.0 18.9796    
cufflinks 10.1949 0.0 27.3841   High
cufflinks 12.2051 0.0 32.276   High
cufflinks 9.18597 0.0 24.896    
cufflinks 8.86613 0.0 24.2066    
cufflinks 3.83044 0.0 11.4092   Low

0 Strain