Gene : Phvul.003G103200 P. vulgaris v2.1
Defline:  (1 of 46) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  1007
Name:  ? Phvul.003G103200 Secondary Identifier:  ? PAC:37146969
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.003G103200 0.5kb upstream 0.5kb upstream 2491 true Chr03: 24000607-24003097 Phaseolus vulgaris
Phvul.003G103200 0.5kb upstream 0.5kb upstream 500 false Chr03: 24000607-24001106 Phaseolus vulgaris
Phvul.003G103200 0.5kb downstream 0.5kb downstream 2491 true Chr03: 24001107-24003597 Phaseolus vulgaris
Phvul.003G103200 0.5kb downstream 0.5kb downstream 500 false Chr03: 24003098-24003597 Phaseolus vulgaris
Phvul.003G103200 1.0kb upstream 1.0kb upstream 2991 true Chr03: 24000107-24003097 Phaseolus vulgaris
Phvul.003G103200 1.0kb upstream 1.0kb upstream 1000 false Chr03: 24000107-24001106 Phaseolus vulgaris
Phvul.003G103200 1.0kb downstream 1.0kb downstream 2991 true Chr03: 24001107-24004097 Phaseolus vulgaris
Phvul.003G103200 1.0kb downstream 1.0kb downstream 1000 false Chr03: 24003098-24004097 Phaseolus vulgaris
Phvul.003G103200 2.0kb upstream 2.0kb upstream 3991 true Chr03: 23999107-24003097 Phaseolus vulgaris
Phvul.003G103200 2.0kb upstream 2.0kb upstream 2000 false Chr03: 23999107-24001106 Phaseolus vulgaris
Phvul.003G103200 2.0kb downstream 2.0kb downstream 3991 true Chr03: 24001107-24005097 Phaseolus vulgaris
Phvul.003G103200 2.0kb downstream 2.0kb downstream 2000 false Chr03: 24003098-24005097 Phaseolus vulgaris
Phvul.003G103200 5.0kb upstream 5.0kb upstream 6991 true Chr03: 23996107-24003097 Phaseolus vulgaris
Phvul.003G103200 5.0kb upstream 5.0kb upstream 5000 false Chr03: 23996107-24001106 Phaseolus vulgaris
Phvul.003G103200 5.0kb downstream 5.0kb downstream 6991 true Chr03: 24001107-24008097 Phaseolus vulgaris
Phvul.003G103200 5.0kb downstream 5.0kb downstream 5000 false Chr03: 24003098-24008097 Phaseolus vulgaris
Phvul.003G103200 10.0kb upstream 10.0kb upstream 11991 true Chr03: 23991107-24003097 Phaseolus vulgaris
Phvul.003G103200 10.0kb upstream 10.0kb upstream 10000 false Chr03: 23991107-24001106 Phaseolus vulgaris
Phvul.003G103200 10.0kb downstream 10.0kb downstream 11991 true Chr03: 24001107-24013097 Phaseolus vulgaris
Phvul.003G103200 10.0kb downstream 10.0kb downstream 10000 false Chr03: 24003098-24013097 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303163 5265 Fabidae View MSA
124072779 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.622123 0.0 2.22832    
cufflinks 0.844743 0.0 2.92348   High
cufflinks 0.371773 0.0 1.38785 Low Low
cufflinks 1.09754 0.0 3.72259   High
cufflinks 0.518664 0.0 1.89092 Low  
cufflinks 0.410526 0.0 1.52231 Low  
cufflinks 0.705123 0.0 2.48579    
cufflinks 0.848426 0.0 2.92546   High
cufflinks 0.448774 0.0 1.65297 Low  
cufflinks 0.433802 0.0 1.60321    
cufflinks 0.461989 0.0 1.69979 Low  

0 Strain